ViewGene
Locus Name:
GeneID:
Location:

GeneID:4847
TrivialName: PA14_40710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40710
PAO1 Ortholog Locus:PA1840
Sequence Length:363
Protein Length:120
Start: 3636090
Stop: 3635728
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05229.1|AE004610_2 (AE004610) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 120/120 (100%), Positives = 120/120 (100%)
Sequence:
ATGGCCGGCGCCGACGTGCTATCGTTGCGCTCCGCTCCACCGCAGCAACGGAACCGTTCCATGAAATTCGTC
CACCAGCGCGAACACCTCAACGAAGACGACATCGTGGTCATCGAGTGTTCGCAGCAATGCAATATCCGCCTG
ATGAACGACGCCAATTTCCGCAGTTTCAAGAATGGCGGGCGGCATAGCTACCATGGCGGCGCCTTCGACCGC
TTCCCGGCGAAGATCAAGGTGCCCAGCACCGGGTTCTGGAACATCACCATCGATACCGTGACCCGGCGCCCG
ATCAGCGTGACGCGCAAGCCGAACTTCAAGTGGTCGATCAAGTTCGTGCGCCGTTCCGGTTCGCAGTTCACC
TGA
Translation:
MAGADVLSLRSAPPQQRNRSMKFVHQREHLNEDDIVVIECSQQCNIRLMNDANFRSFKNGGRHSYHGGAFDR
FPAKIKVPSTGFWNITIDTVTRRPISVTRKPNFKWSIKFVRRSGSQFT*
AnnotationID:4852GeneID:4847
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:41
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1840
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9694




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26835




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4847
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7224
                           PA1840_tr
                           translation of PA1840
                           120
                           99.99
                           99.99
                           0
                           639.0
     

     
     
188859
                           gb|AAG05229.1|AE004610_2
                           (AE004610) hypothetical protein PA1840 [Pseudomonas aeruginosa PAO1]
                           120
                           99.99
                           99.99
                           0
                           639.0
     

     
     
188860
                           gb|AAN69419.1|AE016578_5
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           120
                           68.33
                           73.33
                           20
                           445.0
     

     
     
188861
                           gb|AAO56603.1|
                           (AE016867) conserved domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           121
                           63.63
                           67.76
                           21
                           401.0
     

     






      

          
GC ORFID: 47849How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1840Glimmer Score: 

          
Start: 1317820Stop: 1318182

          
Length: 363


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1840 translation of PA1840Homolog Bit Score 250.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7213 (ORF: BLASTX 157.0), t_PA1840 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGGCGCCGACGTGCTATCGTTGCGCTCCGCTCCACCGCAGCAACGGAACCGTTCCATGAAATTCGTC 
CACCAGCGCGAACACCTCAACGAAGACGACATCGTGGTCATCGAGTGTTCGCAGCAATGCAATATCCGCCTG 
ATGAACGACGCCAATTTCCGCAGTTTCAAGAATGGCGGGCGGCATAGCTACCATGGCGGCGCCTTCGACCGC 
TTCCCGGCGAAGATCAAGGTGCCCAGCACCGGGTTCTGGAACATCACCATCGATACCGTGACCCGGCGCCCG 
ATCAGCGTGACGCGCAAGCCGAACTTCAAGTGGTCGATCAAGTTCGTGCGCCGTTCCGGTTCGCAGTTCACC 
TGA