ViewGene
Locus Name:
GeneID:
Location:

GeneID:4845
TrivialName: PA14_02510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02510
PAO1 Ortholog Locus:PA0199
Sequence Length:402
Protein Length:133
Start: 225681
Stop: 226082
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03588.1|AE004458_3 (AE004458) transport protein ExbD [Pseudomonas aeruginosa PAO1]
Identities = 133/133 (100%), Positives = 133/133 (100%)
Sequence:
ATGGCCTTCTCGACCCAGGACAGCGACGAAGTCCTTTCCGAAATCAACGTCACCCCGCTGGTCGACGTGATG
CTGGTGCTGCTGGTGGTGTTCATCGTCACCGCGCCGCTGCTGACCAACTCGATCCCGATCAACCTGCCGAAG
ACCGAATCGGTGGCCCCGCCGGAGCAGAAGGATCCCCTGGTGGTGAGCATCGATGGCGCCGGCAAGCTGTTC
GTCAACAAGGACGAGATCCAGCCGGAGCTGCTGGAGAGCAACCTGGCCGCGGCCAAGGCGAAGGACGCCGAG
GTCCGCGTGCAGTTGCAGGCCGACGAAGGGGTGAACTACGGCCAGGTGGCGAAGGCCATGGCTTCCATCGAG
CGCGCCGGGATCACCAGGCTGGCAGTGATCACCGCACGCTGA
Translation:
MAFSTQDSDEVLSEINVTPLVDVMLVLLVVFIVTAPLLTNSIPINLPKTESVAPPEQKDPLVVSIDGAGKLF
VNKDEIQPELLESNLAAAKAKDAEVRVQLQADEGVNYGQVAKAMASIERAGITRLAVITAR*
AnnotationID:4850GeneID:4845
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 16:04:39
Gene Name:exbD1
Confidence Code:2
GeneProduct:transport protein ExbD
Cell Localization:()
Synonyms:exbD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:TonB system transport protein ExbD
Functional Category Confidence Code:5
COGs:COG0848,pfam02472
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55990.1| (AE016864) TonB system transport protein ExbD [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 123

 Score =  206 bits (523), Expect = 2e-53
 Identities = 107/123 (86%), Positives = 116/123 (94%)








 
Structural Features:
COG0848, ExbD, Biopolymer transport protein 
[Intracellular trafficking and secretion]
CD-Length = 137 residues,  96.4% aligned
Score =  129 bits (325), Expect = 1e-31
Identities = 58/132 (43%), Positives = 86/132 (65%), Gaps = 1/132 (0%)

pfam02472, ExbD, Biopolymer transport protein ExbD/TolR.
CD-Length = 129 residues,  97.7% aligned
Score = 76.8 bits (189), Expect = 8e-16
Identities = 41/126 (32%), Positives = 68/126 (53%), Gaps = 2/126 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9690




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26831




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33570




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4845_cdd.html


    		




 
URL:

















    ReferenceID:35473




  
Author/Investigator(s):
        Zhao Q, Poole K.





  
Title:
        A second tonB gene in Pseudomonas aeruginosa is linked to the exbB and exbD genes.




  
PubMed:
        10689178


MedLine:
        




    
Source:
FEMS Microbiol Lett. 2000 Mar 1;184(1):127-32.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10689178

















    ReferenceID:35476




  
Author/Investigator(s):
        Eick-Helmerich K, Braun V.





  
Title:
        Import of biopolymers into Escherichia coli: nucleotide sequences of the exbB and exbD genes are homologous to those of the tolQ and tolR genes, respectively.




  
PubMed:
        2670903


MedLine:
        




    
Source:
J Bacteriol. 1989 Sep;171(9):5117-26.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2670903









           
Homologs By Global Alignment 

           

       



     
Gene ID:4845
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7222
                           PA0199_tr
                           translation of PA0199
                           133
                           99.99
                           99.99
                           0
                           640.0
     

     
     
188832
                           gb|AAG03588.1|AE004458_3
                           (AE004458) transport protein ExbD [Pseudomonas aeruginosa PAO1]
                           133
                           99.99
                           99.99
                           0
                           640.0
     

     
     
188833
                           gb|AAF04084.1|AF190125_3
                           (AF190125) ExbD [Pseudomonas aeruginosa]
                           133
                           99.99
                           99.99
                           0
                           640.0
     

     
     
188834
                           gb|AAO55990.1|
                           (AE016864) TonB system transport protein ExbD [Pseudomonas syringae pv. tomato str. DC3000]
                           133
                           80.45
                           87.21
                           10
                           523.0
     

     
     
188835
                           gb|AAO53815.1|
                           (AE016856) biopolymer transport protein ExbD, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           133
                           72.18
                           87.96
                           0
                           485.0
     

     






      

          
GC ORFID: 47847How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0199Glimmer Score: 

          
Start: 6027022Stop: 6027423

          
Length: 402


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0199 translation of PA0199Homolog Bit Score 251.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1255 (ORF: BLASTX 224.0), psyr_15may02_Scaffold2_revised_gene3077 (ORF: BLASTX 191.0), psyr_15may02_Scaffold4_revised_gene5865 (ORF: BLASTX 140.0), t_PA0199 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTTCTCGACCCAGGACAGCGACGAAGTCCTTTCCGAAATCAACGTCACCCCGCTGGTCGACGTGATG 
CTGGTGCTGCTGGTGGTGTTCATCGTCACCGCGCCGCTGCTGACCAACTCGATCCCGATCAACCTGCCGAAG 
ACCGAATCGGTGGCCCCGCCGGAGCAGAAGGATCCCCTGGTGGTGAGCATCGATGGCGCCGGCAAGCTGTTC 
GTCAACAAGGACGAGATCCAGCCGGAGCTGCTGGAGAGCAACCTGGCCGCGGCCAAGGCGAAGGACGCCGAG 
GTCCGCGTGCAGTTGCAGGCCGACGAAGGGGTGAACTACGGCCAGGTGGCGAAGGCCATGGCTTCCATCGAG 
CGCGCCGGGATCACCAGGCTGGCAGTGATCACCGCACGCTGA