ViewGene
Locus Name:
GeneID:
Location:

GeneID:4844
TrivialName: PA14_73320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73320
PAO1 Ortholog Locus:PA5561
Sequence Length:381
Protein Length:126
Start: 6528064
Stop: 6527684
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08946.1|AE004967_17 (AE004967) ATP synthase protein I [Pseudomonas aeruginosa PAO1]
Identities = 125/126 (99%), Positives = 126/126 (100%)
Sequence:
ATGCCAAGTCGCCTGCCGGCATTCAGATTGCTGCTCGTCCAACTGGTAGTAGTGCTTGTTGCTGCGATCTCC
CTGTGGATTTCTTGGGGACCGGTAGCCGGATATTCCGGACTGCTGGGAGGGATGATCGCCTGGTTGCCGAAT
TGTTATTTCGCCTTCAAGGCGTTCCGTTTCAGCGGAGCGCGGGCTGCCCGGGAAATCGTTCGCTCTTTCTAT
GCGGGCGAAGCCGGGAAACTGATTCTGACGGCGGTGCTCTTCGCACTGGCGTTCGCAGGCGTGAAGCCACTG
ATGGCGCCGGCTCTGTTCGGTGTCTATCTGCTGACCCTGATGGTCAGCTGGTGCGCACCCCTGCTGATGGGA
AAAACATTTACAAGACCTTAG
Translation:
MPSRLPAFRLLLVQLVVVLVAAISLWISWGPVAGYSGLLGGMIAWLPNCYFAFKAFRFSGARAAREIVRSFY
AGEAGKLILTAVLFALAFAGVKPLMAPALFGVYLLTLMVSWCAPLLMGKTFTRP*
AnnotationID:4849GeneID:4844
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 08:08:24
Gene Name:atpI
Confidence Code:2
GeneProduct:ATP synthase protein I
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ATP synthase F0, I subunit
Functional Category Confidence Code:5
COGs:pfam03899,COG3312
Secondary Functional Category(ies):
EC Number:3.6.1.34
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70984.1|AE016743_2 (AE016794) ATP synthase protein I [Pseudomonas putida KT2440]
          Length = 135

 Score =  171 bits (433), Expect = 7e-43
 Identities = 88/130 (67%), Positives = 104/130 (80%), Gaps = 5/130 (3%)

>gb|AAO59019.1| (AE016876) ATP synthase F0, I subunit [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 135

 Score =  167 bits (422), Expect = 1e-41
 Identities = 88/131 (67%), Positives = 100/131 (76%), Gaps = 5/131 (3%)






 
Structural Features:
pfam03899, ATP_synt_I, ATP synthase I chain.
CD-Length = 122 residues, 100.0% aligned
Score =  134 bits (339), Expect = 3e-33
Identities = 86/123 (69%), Positives = 92/123 (74%), Gaps = 1/123 (0%)

COG3312, AtpI, F0F1-type ATP synthase, subunit I 
[Energy production and conversion]
CD-Length = 128 residues,  96.1% aligned
Score =  108 bits (272), Expect = 2e-25
Identities = 61/124 (49%), Positives = 81/124 (65%), Gaps = 1/124 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9688




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26829




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33344




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4844_cdd.html


    		




 
URL:

















    ReferenceID:35565




  
Author/Investigator(s):
        Borghese R, Turina P, Lambertini L, Melandri BA.





  
Title:
        The atpIBEXF operon coding for the F0 sector of the ATP synthase from the purple nonsulfur photosynthetic bacterium Rhodobacter capsulatus.




  
PubMed:
        9818357


MedLine:
        




    
Source:
Arch Microbiol. 1998 Oct;170(5):385-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9818357

















    ReferenceID:35566




  
Author/Investigator(s):
        McCarn DF, Whitaker RA, Alam J, Vrba JM, Curtis SE.





  
Title:
        Genes encoding the alpha, gamma, delta, and four F0 subunits of ATP synthase constitute an operon in the cyanobacterium Anabaena sp. strain PCC 7120.




  
PubMed:
        2900236


MedLine:
        




    
Source:
J Bacteriol. 1988 Aug;170(8):3448-58.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2900236

















    ReferenceID:35567




  
Author/Investigator(s):
        Nielsen J, Jorgensen BB, van Meyenburg KV, Hansen FG.





  
Title:
        The promoters of the atp operon of Escherichia coli K12.




  
PubMed:
        6318052


MedLine:
        




    
Source:
Mol Gen Genet. 1984;193(1):64-71.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6318052

















    ReferenceID:35575




  
Author/Investigator(s):
        Pancic PG, Strotmann H, Kowallik KV.





  
Title:
        Chloroplast ATPase genes in the diatom Odontella sinensis reflect cyanobacterial characters in structure and arrangement.




  
PubMed:
        1532839


MedLine:
        




    
Source:
J Mol Biol. 1992 Mar 20;224(2):529-36.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1532839









           
Homologs By Global Alignment 

           

       



     
Gene ID:4844
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7221
                           PA5561_tr
                           translation of PA5561
                           126
                           99.20
                           99.99
                           0
                           642.0
     

     
     
188828
                           gb|AAG08946.1|AE004967_17
                           (AE004967) ATP synthase protein I [Pseudomonas aeruginosa PAO1]
                           126
                           99.20
                           99.99
                           0
                           642.0
     

     
     
188829
                           gb|AAN70984.1|AE016743_2
                           (AE016794) ATP synthase protein I [Pseudomonas putida KT2440]
                           135
                           65.18
                           77.03
                           9
                           436.0
     

     
     
188830
                           emb|CAA44423.1|
                           (X62540) unnamed protein product [Pseudomonas putida]
                           135
                           65.18
                           77.03
                           9
                           436.0
     

     
     
188831
                           gb|AAO59019.1|
                           (AE016876) ATP synthase F0, I subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           135
                           65.18
                           74.07
                           9
                           426.0
     

     






      

          
GC ORFID: 47846How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5561Glimmer Score: 

          
Start: 5791753Stop: 5791373

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5561 translation of PA5561Homolog Bit Score 251.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4125 (ORF: BLASTX 176.0)

          
GC ORF Sequence

           
ATGCCAAGTCGCCTGCCGGCATTCAGATTGCTGCTCGTCCAACTGGTAGTAGTGCTTGTTGCTGCGATCTCC 
CTGTGGATTTCTTGGGGACCGGTAGCCGGATATTCCGGACTGCTGGGAGGGATGATCGCCTGGTTGCCGAAT 
TGTTATTTCGCCTTCAAGGCGTTCCGTTTCAGCGGAGCGCGGGCTGCCCGGGAAATCGTTCGCTCTTTCTAT 
GCGGGCGAAGCCGGGAAACTGATTCTGACGGCGGTGCTCTTCGCACTGGCGTTCGCAGGCGTGAAGCCACTG 
ATGGCGCCGGCTCTGTTCGGTGTCTATCTGCTGACCCTGATGGTCAGCTGGTGCGCACCCCTGCTGATGGGA 
AAAACATTTACAAGACCTTAG