ViewGene
Locus Name:
GeneID:
Location:

GeneID:4843
TrivialName: PA14_66800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66800
PAO1 Ortholog Locus:PA5055
Sequence Length:372
Protein Length:123
Start: 5965960
Stop: 5966331
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08440.1|AE004919_1 (AE004919) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 123/123 (100%), Positives = 123/123 (100%)
Sequence:
ATGCGTATCCCTTCCGCCATCCAGCTGCACAAAGCCTCGAAGACCCTGACCCTGCGCTACGGCGAGGACAGC
TACGACCTGCCCGCCGAGTTCCTCCGCGTGCATTCGCCCTCGGCCGAGGTCCAGGGCCACGGCAACCCGGTA
TTGCAGTACGGCAAGCTGAACGTCGGCCTGGTCGGCGTCGAGCCCGCCGGCCAGTACGCACTGAAGCTGAGC
TTCGACGACGGCCACGACAGCGGCCTGTTCACCTGGGACTACCTGTACGAGCTGGCGACCCGCAAGGACCAG
CTATGGGCCGACTACCTGGCGGAGCTGGCCAGCGCCGGCAAGTCGCGCGACCCCGACGAGTCGGTCGTCAAG
CTGATGCTCTGA
Translation:
MRIPSAIQLHKASKTLTLRYGEDSYDLPAEFLRVHSPSAEVQGHGNPVLQYGKLNVGLVGVEPAGQYALKLS
FDDGHDSGLFTWDYLYELATRKDQLWADYLAELASAGKSRDPDESVVKLML*
AnnotationID:4848GeneID:4843
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 19:07:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5055
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9686




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26827




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35011




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4843_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4843
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7220
                           PA5055_tr
                           translation of PA5055
                           123
                           99.99
                           99.99
                           0
                           641.0
     

     
     
188812
                           gb|AAG08440.1|AE004919_1
                           (AE004919) hypothetical protein PA5055 [Pseudomonas aeruginosa PAO1]
                           123
                           99.99
                           99.99
                           0
                           641.0
     

     
     
188813
                           emb|CAA47150.1|
                           (X66592) unnamed protein product [Pseudomonas aeruginosa]
                           123
                           99.99
                           99.99
                           0
                           641.0
     

     
     
188814
                           gb|AAG23848.1|
                           (AF129396) unknown [Pseudomonas resinovorans]
                           124
                           79.03
                           88.70
                           3
                           519.0
     

     
     
188815
                           dbj|BAB78718.1|
                           (AB049413) ORF1 [Pseudomonas chlororaphis]
                           125
                           77.60
                           86.40
                           2
                           516.0
     

     






      

          
GC ORFID: 47845How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5055Glimmer Score: 

          
Start: 5229643Stop: 5230014

          
Length: 372


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5055 translation of PA5055Homolog Bit Score 251.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3792 (ORF: BLASTX 197.0), t_PA5055 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTATCCCTTCCGCCATCCAGCTGCACAAAGCCTCGAAGACCCTGACCCTGCGCTACGGCGAGGACAGC 
TACGACCTGCCCGCCGAGTTCCTCCGCGTGCATTCGCCCTCGGCCGAGGTCCAGGGCCACGGCAACCCGGTA 
TTGCAGTACGGCAAGCTGAACGTCGGCCTGGTCGGCGTCGAGCCCGCCGGCCAGTACGCACTGAAGCTGAGC 
TTCGACGACGGCCACGACAGCGGCCTGTTCACCTGGGACTACCTGTACGAGCTGGCGACCCGCAAGGACCAG 
CTATGGGCCGACTACCTGGCGGAGCTGGCCAGCGCCGGCAAGTCGCGCGACCCCGACGAGTCGGTCGTCAAG 
CTGATGCTCTGA