ViewGene

Locus Name:
GeneID:
Location:

GeneID:4842
TrivialName: PA14_23120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23120
PAO1 Ortholog Locus:PA3178
Sequence Length:378
Protein Length:125
Start: 2004939
Stop: 2005316
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06566.1|AE004742_2 (AE004742) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 119/125 (95%), Positives = 122/125 (97%)
Sequence:
ATGCACAGGATCCTGGCTATCGCGCTCTGCATGCTATGGAGCGTCGCCGGGCTGGCCGAGGATGCGGCGATG
CCGGCGCAGAGCTGTGCAAGCCTTGGCGAGGCGACGGCCGGCCCCGAGGACAACTTCCGTCCGCCGCTGGAG
GGCGAGGTGATCGACAAGGGGCGCGCCTATTTCCACAGCGCGCCGCGTGCCGACTGTGTCACCGGGGTCTTC
GTGATTCCCGGCGACTTCGTTACTGTCTACAAGCCGAGCGGCGAGTGGCTGAACGTCATGTACCTGGCTCGA
GGCGGCAAGGAAACCAGCGGCTGGCTGCTGGAGAAGCGCGTCCGCTTGCGCCAGGCCTATGGCGCCCCGGAC
GAGCCGGCGCAGCCATAA
Translation:
MHRILAIALCMLWSVAGLAEDAAMPAQSCASLGEATAGPEDNFRPPLEGEVIDKGRAYFHSAPRADCVTGVF
VIPGDFVTVYKPSGEWLNVMYLARGGKETSGWLLEKRVRLRQAYGAPDEPAQP*
AnnotationID:4847GeneID:4842
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 06:06:07
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3178
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9684
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26825
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4842

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7219 PA3178_tr translation of PA3178 125 95.20 97.60 0 641.0
188811 gb|AAG06566.1|AE004742_2 (AE004742) hypothetical protein PA3178 [Pseudomonas aeruginosa PAO1] 125 95.20 97.60 0 641.0
GC ORFID: 47844How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3178Glimmer Score:
Start: 2948992Stop: 2948615
Length: 378
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3178 translation of PA3178Homolog Bit Score 251.0
Other Homologs:
GC ORF Sequence
ATGCACAGGATCCTGGCTATCGCGCTCTGCATGCTATGGAGCGTCGCCGGGCTGGCCGAGGATGCGGCGATG
CCGGCGCAGAGCTGTGCAAGCCTTGGCGAGGCGACGGCCGGCCCCGAGGACAACTTCCGTCCGCCGCTGGAG
GGCGAGGTGATCGACAAGGGGCGCGCCTATTTCCACAGCGCGCCGCGTGCCGACTGTGTCACCGGGGTCTTC
GTGATTCCCGGCGACTTCGTTACTGTCTACAAGCCGAGCGGCGAGTGGCTGAACGTCATGTACCTGGCTCGA
GGCGGCAAGGAAACCAGCGGCTGGCTGCTGGAGAAGCGCGTCCGCTTGCGCCAGGCCTATGGCGCCCCGGAC
GAGCCGGCGCAGCCATAA