ViewGene
Locus Name:
GeneID:
Location:

GeneID:4840
TrivialName: PA14_51640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51640
PAO1 Ortholog Locus:
Sequence Length:378
Protein Length:125
Start: 4589078
Stop: 4589455
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82948.1| (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 125/125 (100%), Positives = 125/125 (100%)
Sequence:
ATGAAATCTGGTATCGCGACCCGTCGCCTGTTCATCAACGACACCAAGGCTTTGGTGCATACCGTCGACGGG
ACCGCCATGCTGGTCACGCCAGGAATCTTCAAGCGTTATGTCCAGGAGCATCCGGAGGTTGAAAAGCTGGCC
CAGGCCAAGGAGACCGCCGGCTGGAAGCTGGTGCAGCGCGCGTTCGAGAAACAGGGTCTTCACCGAAAGACC
AGTAAGAACCTGAATATCTGGACCATCAAGGTTTCTGGTCCTCGCAAGACGAAAGAGCTCAAGGCCTACCTG
CTCCAGGATCCCAAATTGCTGTTCCCTGTGCAGCCTCTGGACAACCCAAGCCTCACGGTCATCACCGATGCC
GAAGGAGGTGTGGAATGA
Translation:
MKSGIATRRLFINDTKALVHTVDGTAMLVTPGIFKRYVQEHPEVEKLAQAKETAGWKLVQRAFEKQGLHRKT
SKNLNIWTIKVSGPRKTKELKAYLLQDPKLLFPVQPLDNPSLTVITDAEGGVE*
AnnotationID:4845GeneID:4840
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 14:02:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9680




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26821




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4840
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
188779
                           gb|AAP82948.1|
                           (AY273870) conserved hypothetical protein [Pseudomonas aeruginosa]
                           125
                           99.99
                           99.99
                           0
                           642.0
     

     
     
188780
                           gb|AAP94681.1|
                           (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa]
                           608
                           20.23
                           20.23
                           483
                           633.0
     

     
     
188781
                           gb|AAP84130.1|
                           (AY273869) putative pathogenesis-related protein [Pseudomonas aeruginosa]
                           639
                           18.77
                           18.93
                           514
                           617.0
     

     
     
188784
                           gb|AAN62129.1|AF440523_36
                           (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa]
                           631
                           10.14
                           13.31
                           507
                           328.0
     

     
     
188783
                           gb|AAN62266.1|AF440524_53
                           (AF440524) conserved hypothetical protein [Pseudomonas aeruginosa]
                           608
                           10.03
                           13.48
                           491
                           328.0
     

     






      

          
GC ORFID: 47842How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS03Glimmer Score: 

          
Start: 364829Stop: 364452

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RS03 125 Homolog: XF1753/ putative pathogenicity related / X. fastidiosa / 9a5c (AAF84562) translation of RS03Homolog Bit Score 251.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAATCTGGTATCGCGACCCGTCGCCTGTTCATCAACGACACCAAGGCTTTGGTGCATACCGTCGACGGG 
ACCGCCATGCTGGTCACGCCAGGAATCTTCAAGCGTTATGTCCAGGAGCATCCGGAGGTTGAAAAGCTGGCC 
CAGGCCAAGGAGACCGCCGGCTGGAAGCTGGTGCAGCGCGCGTTCGAGAAACAGGGTCTTCACCGAAAGACC 
AGTAAGAACCTGAATATCTGGACCATCAAGGTTTCTGGTCCTCGCAAGACGAAAGAGCTCAAGGCCTACCTG 
CTCCAGGATCCCAAATTGCTGTTCCCTGTGCAGCCTCTGGACAACCCAAGCCTCACGGTCATCACCGATGCC 
GAAGGAGGTGTGGAATGA