ViewGene

Locus Name:
GeneID:
Location:

GeneID:484
TrivialName: PA14_67560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67560
PAO1 Ortholog Locus:PA5117
Sequence Length:1818
Protein Length:605
Start: 6036729
Stop: 6034912
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08502.1|AE004924_7 (AE004924) regulatory protein TypA [Pseudomonas aeruginosa PAO1]
Identities = 605/605 (100%), Positives = 605/605 (100%)
Sequence:
GTGATCGAAAATCTGCGCAACATCGCCATCATCGCCCACGTCGACCATGGCAAGACCACCCTGGTGGACAAG
CTGCTGAAGCTGTCCGGCACCCTCGACCGCAAAGAAGCGGAAAGCGAGCGGGTGATGGACTCCAACGACCAG
GAAAAAGAGCGTGGCATCACCATCCTGGCGAAGAACACCGCGATCAAGTGGAACGGCTACAACATCAACATC
GTCGACACCCCCGGTCATGCCGACTTCGGCGGCGAGGTGGAGCGCGTGATGTCGATGGTCGACTCCGTGCTG
CTGGTGGTCGACGCCCAGGACGGCCCCATGCCGCAGACCCGCTTCGTGACCCAGAAGGCCTTCAAGGCCGGC
CTGCGTCCGATCGTGGTGGTGAACAAGATCGACCGTCCGGGCGCGCGTCCGGACTGGGTCATCGACCAGATC
TTCGACCTGTTCGACAACCTCGGCGCCACCGACGAGCAACTCGACTTCCCGATCGTCTACGCCAGCGCCCTG
AACGGCATCGCCGGCCTCGACCACGAGAAGATGGACGACAACATGGACGCGCTGTTCCAGGCGATCATCGAC
CACGTCCCGGCCCCGGTGGTGGACACCGAGGGTCCGTTCCAGATGCAGATCTCGCAGCTGGACTACAACAGC
TTCCTCGGCGTGATCGGTATCGGCCGCATCACCCGCGGCAAGGTCAAGTCCAACACCCCGGTGGTGGCCATC
AGCGACGACGGCAGCAAGCGCAACGGCCGCATCCTGAAGATCATGGGCCACCACGGCCTGCAGCGCGTCGAG
GTGGCCGAGGCGGAAGCCGGCGACATCGTCTGCGTCAGCGGCATGGAGGAGCTGTTCATCTCCGATACCCTG
TGCGACCCGCAGAACGTCGAGGCGCTGCCGCCGCTGACCGTCGACCAGCCGACCGTGAGCATGACCTTCCAG
GTCAACGATTCGCCGTTCGCCGGCCGCGAAGGCAAGTTCGTCACCAGCCGCAACATCAAGGAGCGCCTGGAG
AAGGAACTGCTGCATAACGTGGCGCTGCGCGTCGAGCCGGGCGACAGCCCGGAGAAGTTCAAGGTTTCCGGC
CGTGGCGAACTGCACCTGTCGGTACTGATCGAGACCATGCGCCGCGAAGGCTTCGAGCTGGCCGTGGGCCGC
CCGGAAGTGGTGATCATCGAGAAGGACGGCGAGAAGCAGGAGCCCTACGAGAACGTCACCATCGACATCGAG
GAGCAGCACCAGGGCTCGGTGATGGAGCAGATGGGCCTGCGCAAGGGCGACCTGAGCAACATGATTCCCGAC
GGCAAGGGCCGCGTGCGCCTGGAGTACACCATTCCGGCGCGCGGCCTGATCGGCTTCCGCAACAACTTCCTG
ACCCTGACCTCGGGCACCGGCATCCTGACCTCGACCTTCAGCCACTACGGTCCGATCAAGGCCGGCGAAGTC
AGCAACCGCCAGAACGGCGTACTGGTCTCCATGGCCACCGGCACCGCCCTGACCTACTCGCTGGAGACCCTG
CAGAGCCGCGGCAAGCTGTTCCTCGGCCCGGGCGACGAAATCTACGAAGGCCAGTTGGCCGGCATCAACAGC
CGTGACAACGATCTGGTGATCAACCCGACCAAGGGCAAGAAGCTCGACAACATGCGCGCTTCCGGCAAGGAC
GAAGTCATCGCCCTGGTTCCGCCGATCCGCTTCACCCTCGAGCAGGCGCTGGAGTTCATCGCCGACGACGAG
CTGGTGGAAGTGACGCCGAAGTCGATCCGCCTGCGCAAGAAGATGCTCAACGAGAACGACCGCAAGCGCTAC
GAGCGCAGCAAGGTCTAA
Translation:
MIENLRNIAIIAHVDHGKTTLVDKLLKLSGTLDRKEAESERVMDSNDQEKERGITILAKNTAIKWNGYNINI
VDTPGHADFGGEVERVMSMVDSVLLVVDAQDGPMPQTRFVTQKAFKAGLRPIVVVNKIDRPGARPDWVIDQI
FDLFDNLGATDEQLDFPIVYASALNGIAGLDHEKMDDNMDALFQAIIDHVPAPVVDTEGPFQMQISQLDYNS
FLGVIGIGRITRGKVKSNTPVVAISDDGSKRNGRILKIMGHHGLQRVEVAEAEAGDIVCVSGMEELFISDTL
CDPQNVEALPPLTVDQPTVSMTFQVNDSPFAGREGKFVTSRNIKERLEKELLHNVALRVEPGDSPEKFKVSG
RGELHLSVLIETMRREGFELAVGRPEVVIIEKDGEKQEPYENVTIDIEEQHQGSVMEQMGLRKGDLSNMIPD
GKGRVRLEYTIPARGLIGFRNNFLTLTSGTGILTSTFSHYGPIKAGEVSNRQNGVLVSMATGTALTYSLETL
QSRGKLFLGPGDEIYEGQLAGINSRDNDLVINPTKGKKLDNMRASGKDEVIALVPPIRFTLEQALEFIADDE
LVEVTPKSIRLRKKMLNENDRKRYERSKV*
AnnotationID:493GeneID:484
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 08:08:25
Gene Name:typA
Confidence Code:2
GeneProduct:GTP-binding protein TypA/BipA
Cell Localization:()
Synonyms:bipA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1217,pfam00009
Secondary Functional Category(ies):signal transduction mechanism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53905.1| (AE016857) GTP-binding protein TypA [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 606

 Score =  989 bits (2557), Expect = 0.0
 Identities = 486/599 (81%), Positives = 545/599 (90%)

>gb|AAN70609.1|AE016703_9 (AE016793) GTP-binding protein TypA/BipA [Pseudomonas putida
           KT2440]
          Length = 606

 Score =  979 bits (2530), Expect = 0.0
 Identities = 484/599 (80%), Positives = 540/599 (90%)

>gb|AAN83249.1|AE016770_49 (AE016770) GTP-binding protein typA/BipA [Escherichia coli CFT073]
          Length = 607

 Score =  885 bits (2288), Expect = 0.0
 Identities = 442/603 (73%), Positives = 503/603 (83%)
Structural Features:
COG1217, TypA, Predicted membrane GTPase involved in stress response 
[Signal transduction mechanisms]
CD-Length = 603 residues, 100.0% aligned
Score = 1025 bits (2652), Expect = 0.0
Identities = 414/604 (68%), Positives = 492/604 (81%), Gaps = 1/604 (0%)

pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain. 
CD-Length = 211 residues, 100.0% aligned
Score =  179 bits (456), Expect = 6e-46
Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 19/213 (8%)
Genomic Context:
Comment:
other possible gene name: yihK
ReferenceID:14143
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18113
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34955
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:484_cdd.html
URL:
ReferenceID:35803
Author/Investigator(s): Stockbauer KE, Fuchslocher B, Miller JF, Cotter PA.
Title: Identification and characterization of BipA, a Bordetella Bvg-intermediate phase protein.
PubMed: 11123689
MedLine:
Source:
Mol Microbiol. 2001 Jan;39(1):65-78.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11123689
Homologs By Global Alignment
Gene ID:484

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
847 PA5117_tr translation of PA5117 605 99.99 99.99 0 3083.0
34525 gb|AAG08502.1|AE004924_7 (AE004924) regulatory protein TypA [Pseudomonas aeruginosa PAO1] 605 99.83 99.99 0 3080.0
34526 gb|AAO53905.1| (AE016857) GTP-binding protein TypA [Pseudomonas syringae pv. tomato str. DC3000] 606 80.03 90.09 1 2549.0
34527 gb|AAN70609.1|AE016703_9 (AE016793) GTP-binding protein TypA/BipA [Pseudomonas putida KT2440] 606 79.70 89.27 1 2522.0
34532 dbj|BAB38216.1| (AP002567) putative GTP-binding factor [Escherichia coli O157:H7] 607 72.65 82.86 2 2281.0
GC ORFID: 43486How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5117Glimmer Score:
Start: 5300414Stop: 5298597
Length: 1818
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5117 translation of PA5117Homolog Bit Score 1192.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6549 (ORF: BLASTX 987.0), t_PA5117 (ORF: GLIMMER)
GC ORF Sequence
GTGATCGAAAATCTGCGCAACATCGCCATCATCGCCCACGTCGACCATGGCAAGACCACCCTGGTGGACAAG
CTGCTGAAGCTGTCCGGCACCCTCGACCGCAAAGAAGCGGAAAGCGAGCGGGTGATGGACTCCAACGACCAG
GAAAAAGAGCGTGGCATCACCATCCTGGCGAAGAACACCGCGATCAAGTGGAACGGCTACAACATCAACATC
GTCGACACCCCCGGTCATGCCGACTTCGGCGGCGAGGTGGAGCGCGTGATGTCGATGGTCGACTCCGTGCTG
CTGGTGGTCGACGCCCAGGACGGCCCCATGCCGCAGACCCGCTTCGTGACCCAGAAGGCCTTCAAGGCCGGC
CTGCGTCCGATCGTGGTGGTGAACAAGATCGACCGTCCGGGCGCGCGTCCGGACTGGGTCATCGACCAGATC
TTCGACCTGTTCGACAACCTCGGCGCCACCGACGAGCAACTCGACTTCCCGATCGTCTACGCCAGCGCCCTG
AACGGCATCGCCGGCCTCGACCACGAGAAGATGGACGACAACATGGACGCGCTGTTCCAGGCGATCATCGAC
CACGTCCCGGCCCCGGTGGTGGACACCGAGGGTCCGTTCCAGATGCAGATCTCGCAGCTGGACTACAACAGC
TTCCTCGGCGTGATCGGTATCGGCCGCATCACCCGCGGCAAGGTCAAGTCCAACACCCCGGTGGTGGCCATC
AGCGACGACGGCAGCAAGCGCAACGGCCGCATCCTGAAGATCATGGGCCACCACGGCCTGCAGCGCGTCGAG
GTGGCCGAGGCGGAAGCCGGCGACATCGTCTGCGTCAGCGGCATGGAGGAGCTGTTCATCTCCGATACCCTG
TGCGACCCGCAGAACGTCGAGGCGCTGCCGCCGCTGACCGTCGACCAGCCGACCGTGAGCATGACCTTCCAG
GTCAACGATTCGCCGTTCGCCGGCCGCGAAGGCAAGTTCGTCACCAGCCGCAACATCAAGGAGCGCCTGGAG
AAGGAACTGCTGCATAACGTGGCGCTGCGCGTCGAGCCGGGCGACAGCCCGGAGAAGTTCAAGGTTTCCGGC
CGTGGCGAACTGCACCTGTCGGTACTGATCGAGACCATGCGCCGCGAAGGCTTCGAGCTGGCCGTGGGCCGC
CCGGAAGTGGTGATCATCGAGAAGGACGGCGAGAAGCAGGAGCCCTACGAGAACGTCACCATCGACATCGAG
GAGCAGCACCAGGGCTCGGTGATGGAGCAGATGGGCCTGCGCAAGGGCGACCTGAGCAACATGATTCCCGAC
GGCAAGGGCCGCGTGCGCCTGGAGTACACCATTCCGGCGCGCGGCCTGATCGGCTTCCGCAACAACTTCCTG
ACCCTGACCTCGGGCACCGGCATCCTGACCTCGACCTTCAGCCACTACGGTCCGATCAAGGCCGGCGAAGTC
AGCAACCGCCAGAACGGCGTACTGGTCTCCATGGCCACCGGCACCGCCCTGACCTACTCGCTGGAGACCCTG
CAGAGCCGCGGCAAGCTGTTCCTCGGCCCGGGCGACGAAATCTACGAAGGCCAGTTGGCCGGCATCAACAGC
CGTGACAACGATCTGGTGATCAACCCGACCAAGGGCAAGAAGCTCGACAACATGCGCGCTTCCGGCAAGGAC
GAAGTCATCGCCCTGGTTCCGCCGATCCGCTTCACCCTCGAGCAGGCGCTGGAGTTCATCGCCGACGACGAG
CTGGTGGAAGTGACGCCGAAGTCGATCCGCCTGCGCAAGAAGATGCTCAACGAGAACGACCGCAAGCGCTAC
GAGCGCAGCAAGGTCTAA