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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08502.1|AE004924_7 (AE004924) regulatory protein TypA [Pseudomonas aeruginosa PAO1]
Identities = 605/605 (100%), Positives = 605/605 (100%)
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Sequence:
GTGATCGAAAATCTGCGCAACATCGCCATCATCGCCCACGTCGACCATGGCAAGACCACCCTGGTGGACAAG
CTGCTGAAGCTGTCCGGCACCCTCGACCGCAAAGAAGCGGAAAGCGAGCGGGTGATGGACTCCAACGACCAG
GAAAAAGAGCGTGGCATCACCATCCTGGCGAAGAACACCGCGATCAAGTGGAACGGCTACAACATCAACATC
GTCGACACCCCCGGTCATGCCGACTTCGGCGGCGAGGTGGAGCGCGTGATGTCGATGGTCGACTCCGTGCTG
CTGGTGGTCGACGCCCAGGACGGCCCCATGCCGCAGACCCGCTTCGTGACCCAGAAGGCCTTCAAGGCCGGC
CTGCGTCCGATCGTGGTGGTGAACAAGATCGACCGTCCGGGCGCGCGTCCGGACTGGGTCATCGACCAGATC
TTCGACCTGTTCGACAACCTCGGCGCCACCGACGAGCAACTCGACTTCCCGATCGTCTACGCCAGCGCCCTG
AACGGCATCGCCGGCCTCGACCACGAGAAGATGGACGACAACATGGACGCGCTGTTCCAGGCGATCATCGAC
CACGTCCCGGCCCCGGTGGTGGACACCGAGGGTCCGTTCCAGATGCAGATCTCGCAGCTGGACTACAACAGC
TTCCTCGGCGTGATCGGTATCGGCCGCATCACCCGCGGCAAGGTCAAGTCCAACACCCCGGTGGTGGCCATC
AGCGACGACGGCAGCAAGCGCAACGGCCGCATCCTGAAGATCATGGGCCACCACGGCCTGCAGCGCGTCGAG
GTGGCCGAGGCGGAAGCCGGCGACATCGTCTGCGTCAGCGGCATGGAGGAGCTGTTCATCTCCGATACCCTG
TGCGACCCGCAGAACGTCGAGGCGCTGCCGCCGCTGACCGTCGACCAGCCGACCGTGAGCATGACCTTCCAG
GTCAACGATTCGCCGTTCGCCGGCCGCGAAGGCAAGTTCGTCACCAGCCGCAACATCAAGGAGCGCCTGGAG
AAGGAACTGCTGCATAACGTGGCGCTGCGCGTCGAGCCGGGCGACAGCCCGGAGAAGTTCAAGGTTTCCGGC
CGTGGCGAACTGCACCTGTCGGTACTGATCGAGACCATGCGCCGCGAAGGCTTCGAGCTGGCCGTGGGCCGC
CCGGAAGTGGTGATCATCGAGAAGGACGGCGAGAAGCAGGAGCCCTACGAGAACGTCACCATCGACATCGAG
GAGCAGCACCAGGGCTCGGTGATGGAGCAGATGGGCCTGCGCAAGGGCGACCTGAGCAACATGATTCCCGAC
GGCAAGGGCCGCGTGCGCCTGGAGTACACCATTCCGGCGCGCGGCCTGATCGGCTTCCGCAACAACTTCCTG
ACCCTGACCTCGGGCACCGGCATCCTGACCTCGACCTTCAGCCACTACGGTCCGATCAAGGCCGGCGAAGTC
AGCAACCGCCAGAACGGCGTACTGGTCTCCATGGCCACCGGCACCGCCCTGACCTACTCGCTGGAGACCCTG
CAGAGCCGCGGCAAGCTGTTCCTCGGCCCGGGCGACGAAATCTACGAAGGCCAGTTGGCCGGCATCAACAGC
CGTGACAACGATCTGGTGATCAACCCGACCAAGGGCAAGAAGCTCGACAACATGCGCGCTTCCGGCAAGGAC
GAAGTCATCGCCCTGGTTCCGCCGATCCGCTTCACCCTCGAGCAGGCGCTGGAGTTCATCGCCGACGACGAG
CTGGTGGAAGTGACGCCGAAGTCGATCCGCCTGCGCAAGAAGATGCTCAACGAGAACGACCGCAAGCGCTAC
GAGCGCAGCAAGGTCTAA |
Translation:
MIENLRNIAIIAHVDHGKTTLVDKLLKLSGTLDRKEAESERVMDSNDQEKERGITILAKNTAIKWNGYNINI
VDTPGHADFGGEVERVMSMVDSVLLVVDAQDGPMPQTRFVTQKAFKAGLRPIVVVNKIDRPGARPDWVIDQI
FDLFDNLGATDEQLDFPIVYASALNGIAGLDHEKMDDNMDALFQAIIDHVPAPVVDTEGPFQMQISQLDYNS
FLGVIGIGRITRGKVKSNTPVVAISDDGSKRNGRILKIMGHHGLQRVEVAEAEAGDIVCVSGMEELFISDTL
CDPQNVEALPPLTVDQPTVSMTFQVNDSPFAGREGKFVTSRNIKERLEKELLHNVALRVEPGDSPEKFKVSG
RGELHLSVLIETMRREGFELAVGRPEVVIIEKDGEKQEPYENVTIDIEEQHQGSVMEQMGLRKGDLSNMIPD
GKGRVRLEYTIPARGLIGFRNNFLTLTSGTGILTSTFSHYGPIKAGEVSNRQNGVLVSMATGTALTYSLETL
QSRGKLFLGPGDEIYEGQLAGINSRDNDLVINPTKGKKLDNMRASGKDEVIALVPPIRFTLEQALEFIADDE
LVEVTPKSIRLRKKMLNENDRKRYERSKV* |
AnnotationID:493 | GeneID:484 |
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Modification Date/Time: |
2005-03-15 08:08:25 |
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GeneProduct: | GTP-binding protein TypA/BipA |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (1) Adaptation, protection |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | signal transduction mechanism |
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Homology: | >gb|AAO53905.1| (AE016857) GTP-binding protein TypA [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 606
Score = 989 bits (2557), Expect = 0.0
Identities = 486/599 (81%), Positives = 545/599 (90%)
>gb|AAN70609.1|AE016703_9 (AE016793) GTP-binding protein TypA/BipA [Pseudomonas putida
KT2440]
Length = 606
Score = 979 bits (2530), Expect = 0.0
Identities = 484/599 (80%), Positives = 540/599 (90%)
>gb|AAN83249.1|AE016770_49 (AE016770) GTP-binding protein typA/BipA [Escherichia coli CFT073]
Length = 607
Score = 885 bits (2288), Expect = 0.0
Identities = 442/603 (73%), Positives = 503/603 (83%) |
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Structural Features: | COG1217, TypA, Predicted membrane GTPase involved in stress response
[Signal transduction mechanisms]
CD-Length = 603 residues, 100.0% aligned
Score = 1025 bits (2652), Expect = 0.0
Identities = 414/604 (68%), Positives = 492/604 (81%), Gaps = 1/604 (0%)
pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain.
CD-Length = 211 residues, 100.0% aligned
Score = 179 bits (456), Expect = 6e-46
Identities = 78/213 (36%), Positives = 115/213 (53%), Gaps = 19/213 (8%) |
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Comment: | other possible gene name: yihK |
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