ViewGene
Locus Name:
GeneID:
Location:

GeneID:4838
TrivialName: PA14_56200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56200
PAO1 Ortholog Locus:PA4326
Sequence Length:384
Protein Length:127
Start: 5018418
Stop: 5018035
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07714.1|AE004849_1 (AE004849) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/127 (99%), Positives = 127/127 (100%)
Sequence:
ATGCCTATGCGAAGCTTGATCGTTGCCTGCCTGGCGCTGAGTGCCACCGGTTGTAACAGCTGGTCGCTGAAC
AGCGACCTGAACGGGGCCTACCGCGCCTACGACAAAGGCGATTGCGCACAGGTGATGCTCGACCTGTCGCGG
GCCGAACGGCGGATTCGCGCGCGGCCCTACCTGCAGCCGGAAATCTCGCTGCTGCGCGGCCAGTGCCTGGAA
CGCCAGAGCCTGTTCGTCGACGCGGCGCAGACCTACCACTTCATCATCGCCCGTTACCCCACCAGCGAATAT
GCCTACCGTGCCAAGGCGCGGCTGGAGACCTTGCGCCAGCTGGGCCGGCTGAATGAGACGCCGGCCTCGGCC
AGCGCCGTGCCGACCCGCCTGTAG
Translation:
MPMRSLIVACLALSATGCNSWSLNSDLNGAYRAYDKGDCAQVMLDLSRAERRIRARPYLQPEISLLRGQCLE
RQSLFVDAAQTYHFIIARYPTSEYAYRAKARLETLRQLGRLNETPASASAVPTRL*
AnnotationID:4843GeneID:4838
AnnotatorUID: diggins
Modification Date/Time: 2004-12-23 07:07:53
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57787.1| (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 150

 Score =  149 bits (377), Expect = 2e-36
 Identities = 71/125 (56%), Positives = 94/125 (75%), Gaps = 1/125 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9676




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26817




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36674




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4838_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4838
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7216
                           PA4326_tr
                           translation of PA4326
                           127
                           99.21
                           99.99
                           0
                           643.0
     

     
     
188743
                           gb|AAG07714.1|AE004849_1
                           (AE004849) hypothetical protein PA4326 [Pseudomonas aeruginosa PAO1]
                           127
                           99.21
                           99.99
                           0
                           643.0
     

     
     
188744
                           gb|AAN66986.1|AE016327_1
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           143
                           55.24
                           71.32
                           17
                           413.0
     

     
     
188745
                           gb|AAO57787.1|
                           (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           150
                           47.33
                           63.33
                           23
                           377.0
     

     






      

          
GC ORFID: 47840How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4326Glimmer Score: 

          
Start: 4282094Stop: 4281711

          
Length: 384


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4326 translation of PA4326Homolog Bit Score 252.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2096 (ORF: BLASTX 148.0), t_PA4326 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTATGCGAAGCTTGATCGTTGCCTGCCTGGCGCTGAGTGCCACCGGTTGTAACAGCTGGTCGCTGAAC 
AGCGACCTGAACGGGGCCTACCGCGCCTACGACAAAGGCGATTGCGCACAGGTGATGCTCGACCTGTCGCGG 
GCCGAACGGCGGATTCGCGCGCGGCCCTACCTGCAGCCGGAAATCTCGCTGCTGCGCGGCCAGTGCCTGGAA 
CGCCAGAGCCTGTTCGTCGACGCGGCGCAGACCTACCACTTCATCATCGCCCGTTACCCCACCAGCGAATAT 
GCCTACCGTGCCAAGGCGCGGCTGGAGACCTTGCGCCAGCTGGGCCGGCTGAATGAGACGCCGGCCTCGGCC 
AGCGCCGTGCCGACCCGCCTGTAG