ViewGene

Locus Name:
GeneID:
Location:

GeneID:4836
TrivialName: PA14_44050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44050
PAO1 Ortholog Locus:PA1582
Sequence Length:369
Protein Length:122
Start: 3922385
Stop: 3922017
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04971.1|AE004586_9 (AE004586) succinate dehydrogenase (D subunit) [Pseudomonas aeruginosa PAO1]
Identities = 122/122 (100%), Positives = 122/122 (100%)
Sequence:
ATGGTAACTAACGTCACAAACTTCTCGCGCTCCGGCCTCTACGACTGGATGGCCCAGCGCGTTTCCGCGGTC
GTTCTCGCGGCTTATGTCATTTTCCTGCTGGGCTACCTCATTGCTCACCCCAACATTTCCTACGCGGACTGG
CACGGCCTGTTCTCGCAGGGTTGGATGCGCATCTTCAGCCTGTTGACCCTGGTTGCCCTGAGCGTCCATGCG
TGGGTCGGTATGTGGACCATCTCCACCGACTACCTGACTTCGATGGCTCTCGGCAAGGCGGCGACAGTCGTG
CGTTTCCTCTTCCAGGCGGTTTGCGGCATGGCGATGTTCGCATTCTTCGTCTGGGGTGTGCAGATTCTTTGG
GGTATGTGA
Translation:
MVTNVTNFSRSGLYDWMAQRVSAVVLAAYVIFLLGYLIAHPNISYADWHGLFSQGWMRIFSLLTLVALSVHA
WVGMWTISTDYLTSMALGKAATVVRFLFQAVCGMAMFAFFVWGVQILWGM*
AnnotationID:4841GeneID:4836
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 13:01:10
Gene Name:sdhD
Confidence Code:2
GeneProduct:succinate dehydrogenase (D subunit)
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:succinate dehydrogenase, hydrophobic membrane anchor protein
Functional Category Confidence Code:5
COGs:COG2142
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69773.1|AE016613_8 (AE016789) succinate dehydrogenase, hydrophobic membrane anchor
           protein [Pseudomonas putida KT2440]
          Length = 122

 Score =  209 bits (533), Expect = 2e-54
 Identities = 96/122 (78%), Positives = 107/122 (87%)

>gb|AAO55712.1| (AE016863) succinate dehydrogenase, hydrophobic membrane anchor
           protein [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 122

 Score =  208 bits (530), Expect = 4e-54
 Identities = 97/122 (79%), Positives = 107/122 (87%)

Structural Features:
COG2142, SdhD, Succinate dehydrogenase, hydrophobic anchor subunit 
[Energy production and conversion]
CD-Length = 117 residues,  98.3% aligned
Score = 86.8 bits (215), Expect = 6e-19
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 7/122 (5%)

Genomic Context:
Comment:
ReferenceID:9672
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26813
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36505
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4836_cdd.html
URL:
ReferenceID:36571
Author/Investigator(s): Wood D, Darlison MG, Wilde RJ, Guest JR.
Title: Nucleotide sequence encoding the flavoprotein and hydrophobic subunits of the succinate dehydrogenase of Escherichia coli.
PubMed: 6383359
MedLine:
Source:
Biochem J. 1984 Sep 1;222(2):519-34.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6383359
Homologs By Global Alignment
Gene ID:4836

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7214 PA1582_tr translation of PA1582 122 99.99 99.99 0 644.0
188533 gb|AAG04971.1|AE004586_9 (AE004586) succinate dehydrogenase (D subunit) [Pseudomonas aeruginosa PAO1] 122 99.99 99.99 0 644.0
188535 gb|AAO55712.1| (AE016863) succinate dehydrogenase, hydrophobic membrane anchor protein [Pseudomonas syringae pv. tomato str. DC3000] 122 79.50 87.70 0 530.0
188534 gb|AAN69773.1|AE016613_8 (AE016789) succinate dehydrogenase, hydrophobic membrane anchor protein [Pseudomonas putida KT2440] 122 78.68 87.70 0 533.0
188536 emb|CAA74086.1| (Y13760) putative membrane anchor protein subunit [Shewanella frigidimarina] 122 40.16 66.39 7 270.0
GC ORFID: 47838How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1582Glimmer Score:
Start: 1031524Stop: 1031892
Length: 369
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1582 translation of PA1582Homolog Bit Score 252.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene991 (ORF: BLASTX 211.0), t_PA1582 (ORF: GLIMMER)
GC ORF Sequence
ATGGTAACTAACGTCACAAACTTCTCGCGCTCCGGCCTCTACGACTGGATGGCCCAGCGCGTTTCCGCGGTC
GTTCTCGCGGCTTATGTCATTTTCCTGCTGGGCTACCTCATTGCTCACCCCAACATTTCCTACGCGGACTGG
CACGGCCTGTTCTCGCAGGGTTGGATGCGCATCTTCAGCCTGTTGACCCTGGTTGCCCTGAGCGTCCATGCG
TGGGTCGGTATGTGGACCATCTCCACCGACTACCTGACTTCGATGGCTCTCGGCAAGGCGGCGACAGTCGTG
CGTTTCCTCTTCCAGGCGGTTTGCGGCATGGCGATGTTCGCATTCTTCGTCTGGGGTGTGCAGATTCTTTGG
GGTATGTGA