ViewGene

Locus Name:
GeneID:
Location:

GeneID:4835
TrivialName: PA14_50500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50500
PAO1 Ortholog Locus:PA1076
Sequence Length:363
Protein Length:120
Start: 4486267
Stop: 4485905
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04465.1|AE004539_7 (AE004539) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 120/120 (100%), Positives = 120/120 (100%)
Sequence:
ATGTTCGAACCAGGCCACCTCCATCTGGTCAGCCTGCCCGGCCTCGACCAGCAGGACATCAACATCCATATC
CGCTACGAGGTGCGGCAGAACGCCGAATCCGGCGCCTATGTGCACTTCGACATGGACGGCGAGATCGACGGC
AAGCCGTTCAGCGACTCCTTCGAGCTGCCGCGCGATACCGCCTTCAACTTCGCCAGCGATGCCACGCGGGTC
GCCCAGAAGCACGGCCTGCACCCGAAGTTCGGCGCGATCACCCGGGTGCACAAGGAATACGATGCGATGTTC
GAGGACATTCGCGCCAAGCTGCATGCCCATCCCGGCGAACCGGTGGATCTCGAGCGGATCATTCGCCACGAG
TGA
Translation:
MFEPGHLHLVSLPGLDQQDINIHIRYEVRQNAESGAYVHFDMDGEIDGKPFSDSFELPRDTAFNFASDATRV
AQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRHE*
AnnotationID:4840GeneID:4835
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 18:06:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1076
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9670
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26811
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4835

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7212 PA1076_tr translation of PA1076 120 99.99 99.99 0 643.0
188530 gb|AAG04465.1|AE004539_7 (AE004539) hypothetical protein PA1076 [Pseudomonas aeruginosa PAO1] 120 99.99 99.99 0 643.0
7213 PA2753_tr translation of PA2753 124 51.61 68.54 4 338.0
188531 gb|AAG06141.1|AE004703_7 (AE004703) hypothetical protein PA2753 [Pseudomonas aeruginosa PAO1] 124 51.61 68.54 4 338.0
188532 gb|AAO54805.1| (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 122 45.90 63.93 6 293.0
GC ORFID: 47837How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1076Glimmer Score:
Start: 467641Stop: 468003
Length: 363
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1076 translation of PA1076Homolog Bit Score 252.0
Other Homologs: t_PA2753 (ORF: BLASTX 134.0), psyr_15may02_Scaffold3_revised_gene4960 (ORF: BLASTX 123.0), t_PA1076 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCGAACCAGGCCACCTCCATCTGGTCAGCCTGCCCGGCCTCGACCAGCAGGACATCAACATCCATATC
CGCTACGAGGTGCGGCAGAACGCCGAATCCGGCGCCTATGTGCACTTCGACATGGACGGCGAGATCGACGGC
AAGCCGTTCAGCGACTCCTTCGAGCTGCCGCGCGATACCGCCTTCAACTTCGCCAGCGATGCCACGCGGGTC
GCCCAGAAGCACGGCCTGCACCCGAAGTTCGGCGCGATCACCCGGGTGCACAAGGAATACGATGCGATGTTC
GAGGACATTCGCGCCAAGCTGCATGCCCATCCCGGCGAACCGGTGGATCTCGAGCGGATCATTCGCCACGAG
TGA