ViewGene
Locus Name:
GeneID:
Location:

GeneID:4834
TrivialName: PA14_60690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60690
PAO1 Ortholog Locus:PA4586
Sequence Length:378
Protein Length:125
Start: 5408283
Stop: 5408660
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07974.1|AE004872_5 (AE004872) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/125 (96%), Positives = 125/125 (100%)
Sequence:
ATGTCTTCTTCGCGTCTCGGCGTGCTTGTCCTCGCCCTGCTCCTGCTCACCGCCACCCTGCTCGGCGGCTGC
GAAAACACCCACCAGCACCTGCTCGCCCAGGGCTACCCACCCGCCTATGCCGACGGTTTCGACGACGGCTGC
GGCAGCGGCCGCCAGGCGGCCGGCTCGATCAGCGGCGAATTCCGCAAGGACGTCCCCCGCTACCTGCGCGAG
GCGATCTACGCCAGCGGCTGGGGCGACGGCTTCGAGCAATGCCGGTCGATGGCGCGGAGCGAGGAGCGGCGG
CGTTTCGAGGAACGCCAGTGGGACGACCGCGACGACGATTGGCAGCGCGACCGCGACCGCGCGCTGGCCCGG
GCCTTGCGCGAGCGCTGA
Translation:
MSSSRLGVLVLALLLLTATLLGGCENTHQHLLAQGYPPAYADGFDDGCGSGRQAAGSISGEFRKDVPRYLRE
AIYASGWGDGFEQCRSMARSEERRRFEERQWDDRDDDWQRDRDRALARALRER*
AnnotationID:4839GeneID:4834
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 05:05:47
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA4586
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66302.1|AE016258_8 (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 118

 Score =  147 bits (371), Expect = 1e-35
 Identities = 63/106 (59%), Positives = 79/106 (74%)

>gb|AAO58046.1| (AE016872) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 117

 Score =  124 bits (311), Expect = 1e-28
 Identities = 56/112 (50%), Positives = 80/112 (71%), Gaps = 3/112 (2%)







 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9668




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26809




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4834
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7211
                           PA4586_tr
                           translation of PA4586
                           125
                           96.80
                           99.99
                           0
                           647.0
     

     
     
188527
                           gb|AAG07974.1|AE004872_5
                           (AE004872) hypothetical protein PA4586 [Pseudomonas aeruginosa PAO1]
                           125
                           96.80
                           99.99
                           0
                           647.0
     

     
     
188528
                           gb|AAN66302.1|AE016258_8
                           (AE016776) lipoprotein, putative [Pseudomonas putida KT2440]
                           125
                           53.60
                           67.20
                           7
                           373.0
     

     
     
188529
                           gb|AAO58046.1|
                           (AE016872) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           126
                           44.44
                           64.28
                           10
                           306.0
     

     






      

          
GC ORFID: 47836How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4586Glimmer Score: 

          
Start: 4671963Stop: 4672340

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4586 translation of PA4586Homolog Bit Score 253.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5637 (ORF: BLASTX 121.0), t_PA4586 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCTTCTTCGCGTCTCGGCGTGCTTGTCCTCGCCCTGCTCCTGCTCACCGCCACCCTGCTCGGCGGCTGC 
GAAAACACCCACCAGCACCTGCTCGCCCAGGGCTACCCACCCGCCTATGCCGACGGTTTCGACGACGGCTGC 
GGCAGCGGCCGCCAGGCGGCCGGCTCGATCAGCGGCGAATTCCGCAAGGACGTCCCCCGCTACCTGCGCGAG 
GCGATCTACGCCAGCGGCTGGGGCGACGGCTTCGAGCAATGCCGGTCGATGGCGCGGAGCGAGGAGCGGCGG 
CGTTTCGAGGAACGCCAGTGGGACGACCGCGACGACGATTGGCAGCGCGACCGCGACCGCGCGCTGGCCCGG 
GCCTTGCGCGAGCGCTGA