ViewGene
Locus Name:
GeneID:
Location:

GeneID:4832
TrivialName: PA14_20280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20280
PAO1 Ortholog Locus:PA3386
Sequence Length:366
Protein Length:121
Start: 1747448
Stop: 1747083
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06774.1|AE004760_2 (AE004760) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 120/121 (99%), Positives = 120/121 (99%)
Sequence:
ATGAGCTATCGCCTGGCCGCCGATGCCCTGGTCTGGCTGCACCTGGGCTTCATCCTGTTCGTCCTGTTCGGC
GGCCTGCTGCCGTTGCGTTGGCCACGCCTGGCCTGGCTGCACCTGCCGGCGGTGGCCTGGGGGTGCGCCGTT
GAGTTCCTCGGCCTGCCCTGTCCGCTGACCCCGCTGGAGAATCGTCTGCGCCGGGCCGCCGGGGACGCCGGC
TACAGCGGCGGCTTCGTCGAGCACTACCTGTTGCCGCTGATCTATCCCGCCGGCCTGACCCCGGCGGTGCAA
TGGATCCTTGGCGCCATCGTTCTGCTGGTCAACCTGATCGCCTACCTGTATCTGTGGCATCGCCGCAGTAGC
CGCTGA
Translation:
MSYRLAADALVWLHLGFILFVLFGGLLPLRWPRLAWLHLPAVAWGCAVEFLGLPCPLTPLENRLRRAAGDAG
YSGGFVEHYLLPLIYPAGLTPAVQWILGAIVLLVNLIAYLYLWHRRSSR*
AnnotationID:4837GeneID:4832
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 08:08:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3386
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32920.1| (BX640444) putative membrane protein [Bordetella bronchiseptica]
          Length = 125

 Score =  137 bits (345), Expect = 1e-32
 Identities = 63/118 (53%), Positives = 74/118 (62%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9664




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26805




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4832
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7209
                           PA3386_tr
                           translation of PA3386
                           121
                           99.17
                           99.17
                           0
                           645.0
     

     
     
188520
                           gb|AAG06774.1|AE004760_2
                           (AE004760) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           121
                           99.17
                           99.17
                           0
                           645.0
     

     
     
188522
                           gb|AAN68155.1|AE016447_4
                           (AE016783) conserved hypothetical protein [Pseudomonas putida KT2440]
                           124
                           63.70
                           70.16
                           4
                           388.0
     

     
     
188521
                           gb|AAO55146.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           125
                           63.20
                           72.80
                           4
                           386.0
     

     
     
188523
                           emb|CAE32920.1|
                           (BX640444) putative membrane protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           125
                           50.40
                           59.20
                           4
                           341.0
     

     






      

          
GC ORFID: 47834How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3386Glimmer Score: 

          
Start: 3206484Stop: 3206849

          
Length: 366


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3386 translation of PA3386Homolog Bit Score 253.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6392 (ORF: BLASTX 155.0), t_PA3386 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTATCGCCTGGCCGCCGATGCCCTGGTCTGGCTGCACCTGGGCTTCATCCTGTTCGTCCTGTTCGGC 
GGCCTGCTGCCGTTGCGTTGGCCACGCCTGGCCTGGCTGCACCTGCCGGCGGTGGCCTGGGGGTGCGCCGTT 
GAGTTCCTCGGCCTGCCCTGTCCGCTGACCCCGCTGGAGAATCGTCTGCGCCGGGCCGCCGGGGACGCCGGC 
TACAGCGGCGGCTTCGTCGAGCACTACCTGTTGCCGCTGATCTATCCCGCCGGCCTGACCCCGGCGGTGCAA 
TGGATCCTTGGCGCCATCGTTCTGCTGGTCAACCTGATCGCCTACCTGTATCTGTGGCATCGCCGCAGTAGC 
CGCTGA