ViewGene
Locus Name:
GeneID:
Location:

GeneID:4830
TrivialName: PA14_32440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32440
PAO1 Ortholog Locus:PA2490
Sequence Length:375
Protein Length:124
Start: 2821426
Stop: 2821052
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05878.1|AE004676_10 (AE004676) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 122/124 (98%), Positives = 123/124 (99%)
Sequence:
ATGTCCACCAGCACAACCCAAGCGATCAACTTCGCCGCCAAGCTCGCCCTGTTCGACGACCGCTGGCAACCC
AGGGTGATCGCCCAGATGAACGACTACCAGTTCAAGCTGGTGAAGATCGAAGGCGACTTCGTCTGGCACAGC
CACGCCGACACCGACGAGACCTTCATCGTCCTCGCCGGTCGCCTGCGCATCGATTTCCGCGACGGCGCGGTG
CACCTGGGCCCCGGCGAGATGTATGTGGTGCCGCGTGGCGTGGAGCACAAGCCGTTCGCCGAGGGCGAGGTG
CGCATGCTCCTGGTGGAGCCCTGCGGCGTGCGCAATACCGGCGACCAGGGCGGCGAGCGGACGGCGGTCAAC
GATCTGTGGATCTGA
Translation:
MSTSTTQAINFAAKLALFDDRWQPRVIAQMNDYQFKLVKIEGDFVWHSHADTDETFIVLAGRLRIDFRDGAV
HLGPGEMYVVPRGVEHKPFAEGEVRMLLVEPCGVRNTGDQGGERTAVNDLWI*
AnnotationID:4835GeneID:4830
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 15:03:44
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2490
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9660




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26801




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33027




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4830_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4830
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7207
                           PA2490_tr
                           translation of PA2490
                           124
                           98.38
                           99.19
                           0
                           645.0
     

     
     
188511
                           gb|AAG05878.1|AE004676_10
                           (AE004676) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           124
                           98.38
                           99.19
                           0
                           645.0
     

     
     
188513
                           gb|AAM35020.1|
                           (AE011636) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           124
                           62.90
                           75.00
                           1
                           406.0
     

     
     
188512
                           gb|AAN67685.1|AE016399_2
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           128
                           53.12
                           73.43
                           4
                           409.0
     

     
     
188514
                           dbj|BAC50829.1|
                           (AP005955) blr5564 [Bradyrhizobium japonicum USDA 110]
                           127
                           45.66
                           59.84
                           13
                           313.0
     

     






      

          
GC ORFID: 47832How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2490Glimmer Score: 

          
Start: 2132498Stop: 2132872

          
Length: 375


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2490 translation of PA2490Homolog Bit Score 253.0

          
Other Homologs:  t_PA2490 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCACCAGCACAACCCAAGCGATCAACTTCGCCGCCAAGCTCGCCCTGTTCGACGACCGCTGGCAACCC 
AGGGTGATCGCCCAGATGAACGACTACCAGTTCAAGCTGGTGAAGATCGAAGGCGACTTCGTCTGGCACAGC 
CACGCCGACACCGACGAGACCTTCATCGTCCTCGCCGGTCGCCTGCGCATCGATTTCCGCGACGGCGCGGTG 
CACCTGGGCCCCGGCGAGATGTATGTGGTGCCGCGTGGCGTGGAGCACAAGCCGTTCGCCGAGGGCGAGGTG 
CGCATGCTCCTGGTGGAGCCCTGCGGCGTGCGCAATACCGGCGACCAGGGCGGCGAGCGGACGGCGGTCAAC 
GATCTGTGGATCTGA