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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07697.1|AE004847_4 (AE004847) chemotactic transducer PctA [Pseudomonas aeruginosa PAO1]
Identities = 626/629 (99%), Positives = 626/629 (99%)
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Sequence:
ATGATCAAAAGTCTGAAGTTCAGCCACAAGATCCTCCTCGCGGCCTCCCTCGTGGTGTTCGCCGCTTTCGCA
CTGTTCACCCTCTACAACGATTACCTGCAGCGCAACGCGATCCGCGAGGACCTCGAAAGCTACCTGCGGGAA
ATGGGTGACGTGACCTCCAGCAACATCCAGAACTGGCTCGGTGGCCGTCTGTTGCTGGTCGAGCAGACCGCC
CAGACCCTGGCCCGCGACCACAGCCCGGAAGCCGTCAGCGCCCTGCTCGAACAGCCGGCCCTGACCTCGACC
TTCAGCTTCACCTACCTCGGCCAGCAGGACGGCGTCTTCACCATGCGCCCGGACAGCCCGATGCCGGCCGGC
TACGATCCGCGCAGCCGGCCCTGGTACAAGGACGCCGTAGCGGCCGGCGGCCTGACCCTGACCGAGCCCTAC
GTCGACGCCGCCACCCAGGAACTGATCATCACCGCGGCGACGCCGGTGAAGGCCGCCGGCAACACCCTCGGC
GTGGTGGGCGGCGACCTCAGCCTGAAGACCCTGGTACAGATCATCAATTCGCTGGACTTCAGCGGCATGGGC
TACGCCTTCCTGGTCAGCGGCGACGGCAAGATCCTGGTGCACCCGGACAAAGAGCAGGTGATGAAGACCCTG
AGCGAGGTCTACCCGCAGAACACGCCGAAGATCGCCACCGGTTTCAGCGAGGCCGAATTGCACGGGCATACC
CGCATCCTCGCCTTTACCCCGATCAAGGGCCTGCCTTCGGTGACCTGGTACCTGGCGCTGTCCATCGACAAG
GACAAGGCCTACGCCATGCTCAGCAAGTTCCGCGTCTCGGCCATCGCCGCCGCGCTGATCTCCATCGTCGCC
ATCCTGGTCCTGCTCGGCCTGCTGATCCGCCTGCTGATGCAGCCGCTGCACCTGATGGGTCGTGCCATGCAG
GACATCGCCCAGGGCGAGGGCGACCTGACCAAGCGCCTCGCCGTGACCAGCCGCGATGAATTCGGCGTGCTC
GGCGATGCCTTCAACCAGTTCGTCGAGCGGATCCATCGCTCGATCCGGGAAGTCGCCGGGACCGCGCACAAA
CTGCACGACGTCTCGCAACTGGTGGTGAACGCCTCGAACTCTTCGATGGCCAACTCCGACGAGCAGTCCAAC
CGCACCAACAGCGTCGCCGCGGCGATCAACGAACTCGGCGCCGCCGCCCAGGAAATCGCCCGCAACGCCGCC
GATGCCTCGCACCATGCGTCCGACGCCAACCACCAGGCCGAAGACGGCAAGCAGGTGGTCGAGCAGACCATC
CGCGCGATGAACGAGCTTTCCGAGAAGATCAGCGCCTCCTGCGCCAACATCGAGGCCCTCAACAGTCGCACG
GTGAACATCGGCCAGATCCTCGAGGTGATCAAGGGCATCTCCGAGCAGACCAACCTGCTCGCCCTCAACGCC
GCCATCGAAGCCGCCCGCGCCGGCGAGGCCGGGCGCGGCTTCGCGGTGGTCGCCGACGAGGTGCGCAACCTG
GCCCATCGCGCCCAGGAATCGGCGCTGCAGATCCAGAAGATGATCGAAGAGCTGCAAGTCGGCGCCCGCGAG
GCGGTGGCCACCATGACCGAGAGCCAGCGCTACAGCCTGGAGAGCGTGGAGATCGCCAACCGTGCCGGCGAA
AGCCTGGGCAGCGTGACCCGGCGGATCGGCGAGATCGACGGGATGAACCAGTCGGTGGCCACCGCCACCGAG
GAACAGACCGCGGTGGTCGACTCGCTGAACATGGACATCACCGAGATCAACACCCTCAACCAGGAAGGCGTG
GAGAACCTCCAGGCCACCCTGCGCGCCTGCGGCGAGCTGGAAACCCAGGCCGGGCGCCTGCGCCAACTGGTG
GACAGCTTCAAGATCTGA |
Translation:
MIKSLKFSHKILLAASLVVFAAFALFTLYNDYLQRNAIREDLESYLREMGDVTSSNIQNWLGGRLLLVEQTA
QTLARDHSPEAVSALLEQPALTSTFSFTYLGQQDGVFTMRPDSPMPAGYDPRSRPWYKDAVAAGGLTLTEPY
VDAATQELIITAATPVKAAGNTLGVVGGDLSLKTLVQIINSLDFSGMGYAFLVSGDGKILVHPDKEQVMKTL
SEVYPQNTPKIATGFSEAELHGHTRILAFTPIKGLPSVTWYLALSIDKDKAYAMLSKFRVSAIAAALISIVA
ILVLLGLLIRLLMQPLHLMGRAMQDIAQGEGDLTKRLAVTSRDEFGVLGDAFNQFVERIHRSIREVAGTAHK
LHDVSQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAADASHHASDANHQAEDGKQVVEQTI
RAMNELSEKISASCANIEALNSRTVNIGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNL
AHRAQESALQIQKMIEELQVGAREAVATMTESQRYSLESVEIANRAGESLGSVTRRIGEIDGMNQSVATATE
EQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLVDSFKI* |
AnnotationID:492 | GeneID:483 |
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Modification Date/Time: |
2005-04-04 08:08:52 |
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GeneProduct: | chemotactic transducer PctA |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (10) Chemotaxis |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | adaptation, protection |
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Homology: | >gb|AAN66994.1|AE016327_9 (AE016779) methyl-accepting chemotaxis transducer [Pseudomonas
putida KT2440]
Length = 624
Score = 822 bits (2122), Expect = 0.0
Identities = 430/629 (68%), Positives = 514/629 (81%), Gaps = 5/629 (0%)
>gb|AAO54592.1| (AE016859) methyl-accepting chemotaxis protein [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 626
Score = 768 bits (1982), Expect = 0.0
Identities = 405/626 (64%), Positives = 482/626 (76%), Gaps = 1/626 (0%)
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Structural Features: | smart00283, MA, Methyl-accepting chemotaxis-like domains
(chemotaxis sensory transducer).
CD-Length = 262 residues, 99.6% aligned
Score = 221 bits (565), Expect = 2e-58
Identities = 110/261 (42%), Positives = 153/261 (58%)
pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues, 99.6% aligned
Score = 179 bits (456), Expect = 8e-46
Identities = 95/250 (38%), Positives = 153/250 (61%) |
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GC ORFID: 43485 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA4309 | Glimmer Score: |
Start: 4262378 | Stop: 4264267 |
Length: 1890 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA4309 translation of PA4309 | Homolog Bit Score 1192.0 |
Other Homologs: t_PA4310 (ORF: BLASTX 1013.0), t_PA4307 (ORF: BLASTX 910.0), psyr_15may02_Scaffold3_revised_gene4268 (ORF: BLASTX 769.0), psyr_15may02_Scaffold8_revised_gene7599 (ORF: BLASTX 766.0), psyr_15may02_Scaffold1_revised_gene1215 (ORF: BLASTX 743.0), t_PA2561 (ORF: BLASTX 221.0), t_PA4309 (ORF: GLIMMER) |
GC ORF Sequence |
ATGATCAAAAGTCTGAAGTTCAGCCACAAGATCCTCCTCGCGGCCTCCCTCGTGGTGTTCGCCGCTTTCGCA CTGTTCACCCTCTACAACGATTACCTGCAGCGCAACGCGATCCGCGAGGACCTCGAAAGCTACCTGCGGGAA ATGGGTGACGTGACCTCCAGCAACATCCAGAACTGGCTCGGTGGCCGTCTGTTGCTGGTCGAGCAGACCGCC CAGACCCTGGCCCGCGACCACAGCCCGGAAGCCGTCAGCGCCCTGCTCGAACAGCCGGCCCTGACCTCGACC TTCAGCTTCACCTACCTCGGCCAGCAGGACGGCGTCTTCACCATGCGCCCGGACAGCCCGATGCCGGCCGGC TACGATCCGCGCAGCCGGCCCTGGTACAAGGACGCCGTAGCGGCCGGCGGCCTGACCCTGACCGAGCCCTAC GTCGACGCCGCCACCCAGGAACTGATCATCACCGCGGCGACGCCGGTGAAGGCCGCCGGCAACACCCTCGGC GTGGTGGGCGGCGACCTCAGCCTGAAGACCCTGGTACAGATCATCAATTCGCTGGACTTCAGCGGCATGGGC TACGCCTTCCTGGTCAGCGGCGACGGCAAGATCCTGGTGCACCCGGACAAAGAGCAGGTGATGAAGACCCTG AGCGAGGTCTACCCGCAGAACACGCCGAAGATCGCCACCGGTTTCAGCGAGGCCGAATTGCACGGGCATACC CGCATCCTCGCCTTTACCCCGATCAAGGGCCTGCCTTCGGTGACCTGGTACCTGGCGCTGTCCATCGACAAG GACAAGGCCTACGCCATGCTCAGCAAGTTCCGCGTCTCGGCCATCGCCGCCGCGCTGATCTCCATCGTCGCC ATCCTGGTCCTGCTCGGCCTGCTGATCCGCCTGCTGATGCAGCCGCTGCACCTGATGGGTCGTGCCATGCAG GACATCGCCCAGGGCGAGGGCGACCTGACCAAGCGCCTCGCCGTGACCAGCCGCGATGAATTCGGCGTGCTC GGCGATGCCTTCAACCAGTTCGTCGAGCGGATCCATCGCTCGATCCGGGAAGTCGCCGGGACCGCGCACAAA CTGCACGACGTCTCGCAACTGGTGGTGAACGCCTCGAACTCTTCGATGGCCAACTCCGACGAGCAGTCCAAC CGCACCAACAGCGTCGCCGCGGCGATCAACGAACTCGGCGCCGCCGCCCAGGAAATCGCCCGCAACGCCGCC GATGCCTCGCACCATGCGTCCGACGCCAACCACCAGGCCGAAGACGGCAAGCAGGTGGTCGAGCAGACCATC CGCGCGATGAACGAGCTTTCCGAGAAGATCAGCGCCTCCTGCGCCAACATCGAGGCCCTCAACAGTCGCACG GTGAACATCGGCCAGATCCTCGAGGTGATCAAGGGCATCTCCGAGCAGACCAACCTGCTCGCCCTCAACGCC GCCATCGAAGCCGCCCGCGCCGGCGAGGCCGGGCGCGGCTTCGCGGTGGTCGCCGACGAGGTGCGCAACCTG GCCCATCGCGCCCAGGAATCGGCGCTGCAGATCCAGAAGATGATCGAAGAGCTGCAAGTCGGCGCCCGCGAG GCGGTGGCCACCATGACCGAGAGCCAGCGCTACAGCCTGGAGAGCGTGGAGATCGCCAACCGTGCCGGCGAA AGCCTGGGCAGCGTGACCCGGCGGATCGGCGAGATCGACGGGATGAACCAGTCGGTGGCCACCGCCACCGAG GAACAGACCGCGGTGGTCGACTCGCTGAACATGGACATCACCGAGATCAACACCCTCAACCAGGAAGGCGTG GAGAACCTCCAGGCCACCCTGCGCGCCTGCGGCGAGCTGGAAACCCAGGCCGGGCGCCTGCGCCAACTGGTG GACAGCTTCAAGATCTGA |
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