ViewGene

Locus Name:
GeneID:
Location:

GeneID:483
TrivialName: PA14_56000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56000
PAO1 Ortholog Locus:PA4309
Sequence Length:1890
Protein Length:629
Start: 4998702
Stop: 5000591
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07697.1|AE004847_4 (AE004847) chemotactic transducer PctA [Pseudomonas aeruginosa PAO1]
Identities = 626/629 (99%), Positives = 626/629 (99%)
Sequence:
ATGATCAAAAGTCTGAAGTTCAGCCACAAGATCCTCCTCGCGGCCTCCCTCGTGGTGTTCGCCGCTTTCGCA
CTGTTCACCCTCTACAACGATTACCTGCAGCGCAACGCGATCCGCGAGGACCTCGAAAGCTACCTGCGGGAA
ATGGGTGACGTGACCTCCAGCAACATCCAGAACTGGCTCGGTGGCCGTCTGTTGCTGGTCGAGCAGACCGCC
CAGACCCTGGCCCGCGACCACAGCCCGGAAGCCGTCAGCGCCCTGCTCGAACAGCCGGCCCTGACCTCGACC
TTCAGCTTCACCTACCTCGGCCAGCAGGACGGCGTCTTCACCATGCGCCCGGACAGCCCGATGCCGGCCGGC
TACGATCCGCGCAGCCGGCCCTGGTACAAGGACGCCGTAGCGGCCGGCGGCCTGACCCTGACCGAGCCCTAC
GTCGACGCCGCCACCCAGGAACTGATCATCACCGCGGCGACGCCGGTGAAGGCCGCCGGCAACACCCTCGGC
GTGGTGGGCGGCGACCTCAGCCTGAAGACCCTGGTACAGATCATCAATTCGCTGGACTTCAGCGGCATGGGC
TACGCCTTCCTGGTCAGCGGCGACGGCAAGATCCTGGTGCACCCGGACAAAGAGCAGGTGATGAAGACCCTG
AGCGAGGTCTACCCGCAGAACACGCCGAAGATCGCCACCGGTTTCAGCGAGGCCGAATTGCACGGGCATACC
CGCATCCTCGCCTTTACCCCGATCAAGGGCCTGCCTTCGGTGACCTGGTACCTGGCGCTGTCCATCGACAAG
GACAAGGCCTACGCCATGCTCAGCAAGTTCCGCGTCTCGGCCATCGCCGCCGCGCTGATCTCCATCGTCGCC
ATCCTGGTCCTGCTCGGCCTGCTGATCCGCCTGCTGATGCAGCCGCTGCACCTGATGGGTCGTGCCATGCAG
GACATCGCCCAGGGCGAGGGCGACCTGACCAAGCGCCTCGCCGTGACCAGCCGCGATGAATTCGGCGTGCTC
GGCGATGCCTTCAACCAGTTCGTCGAGCGGATCCATCGCTCGATCCGGGAAGTCGCCGGGACCGCGCACAAA
CTGCACGACGTCTCGCAACTGGTGGTGAACGCCTCGAACTCTTCGATGGCCAACTCCGACGAGCAGTCCAAC
CGCACCAACAGCGTCGCCGCGGCGATCAACGAACTCGGCGCCGCCGCCCAGGAAATCGCCCGCAACGCCGCC
GATGCCTCGCACCATGCGTCCGACGCCAACCACCAGGCCGAAGACGGCAAGCAGGTGGTCGAGCAGACCATC
CGCGCGATGAACGAGCTTTCCGAGAAGATCAGCGCCTCCTGCGCCAACATCGAGGCCCTCAACAGTCGCACG
GTGAACATCGGCCAGATCCTCGAGGTGATCAAGGGCATCTCCGAGCAGACCAACCTGCTCGCCCTCAACGCC
GCCATCGAAGCCGCCCGCGCCGGCGAGGCCGGGCGCGGCTTCGCGGTGGTCGCCGACGAGGTGCGCAACCTG
GCCCATCGCGCCCAGGAATCGGCGCTGCAGATCCAGAAGATGATCGAAGAGCTGCAAGTCGGCGCCCGCGAG
GCGGTGGCCACCATGACCGAGAGCCAGCGCTACAGCCTGGAGAGCGTGGAGATCGCCAACCGTGCCGGCGAA
AGCCTGGGCAGCGTGACCCGGCGGATCGGCGAGATCGACGGGATGAACCAGTCGGTGGCCACCGCCACCGAG
GAACAGACCGCGGTGGTCGACTCGCTGAACATGGACATCACCGAGATCAACACCCTCAACCAGGAAGGCGTG
GAGAACCTCCAGGCCACCCTGCGCGCCTGCGGCGAGCTGGAAACCCAGGCCGGGCGCCTGCGCCAACTGGTG
GACAGCTTCAAGATCTGA
Translation:
MIKSLKFSHKILLAASLVVFAAFALFTLYNDYLQRNAIREDLESYLREMGDVTSSNIQNWLGGRLLLVEQTA
QTLARDHSPEAVSALLEQPALTSTFSFTYLGQQDGVFTMRPDSPMPAGYDPRSRPWYKDAVAAGGLTLTEPY
VDAATQELIITAATPVKAAGNTLGVVGGDLSLKTLVQIINSLDFSGMGYAFLVSGDGKILVHPDKEQVMKTL
SEVYPQNTPKIATGFSEAELHGHTRILAFTPIKGLPSVTWYLALSIDKDKAYAMLSKFRVSAIAAALISIVA
ILVLLGLLIRLLMQPLHLMGRAMQDIAQGEGDLTKRLAVTSRDEFGVLGDAFNQFVERIHRSIREVAGTAHK
LHDVSQLVVNASNSSMANSDEQSNRTNSVAAAINELGAAAQEIARNAADASHHASDANHQAEDGKQVVEQTI
RAMNELSEKISASCANIEALNSRTVNIGQILEVIKGISEQTNLLALNAAIEAARAGEAGRGFAVVADEVRNL
AHRAQESALQIQKMIEELQVGAREAVATMTESQRYSLESVEIANRAGESLGSVTRRIGEIDGMNQSVATATE
EQTAVVDSLNMDITEINTLNQEGVENLQATLRACGELETQAGRLRQLVDSFKI*
AnnotationID:492GeneID:483
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 08:08:52
Gene Name:pctA
Confidence Code:1
GeneProduct:chemotactic transducer PctA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66994.1|AE016327_9 (AE016779) methyl-accepting chemotaxis transducer [Pseudomonas
           putida KT2440]
          Length = 624

 Score =  822 bits (2122), Expect = 0.0
 Identities = 430/629 (68%), Positives = 514/629 (81%), Gaps = 5/629 (0%)

>gb|AAO54592.1| (AE016859) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 626

 Score =  768 bits (1982), Expect = 0.0
 Identities = 405/626 (64%), Positives = 482/626 (76%), Gaps = 1/626 (0%)

Structural Features:
smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).
CD-Length = 262 residues,  99.6% aligned
Score =  221 bits (565), Expect = 2e-58
Identities = 110/261 (42%), Positives = 153/261 (58%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain.
CD-Length = 251 residues,  99.6% aligned
Score =  179 bits (456), Expect = 8e-46
Identities = 95/250 (38%), Positives = 153/250 (61%)
Genomic Context:
Comment:
ReferenceID:969
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18111
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36672
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:483_cdd.html
URL:
ReferenceID:36800
Author/Investigator(s): Kuroda A, Kumano T, Taguchi K, Nikata T, Kato J, Ohtake H.
Title: Molecular cloning and characterization of a chemotactic transducer gene in Pseudomonas aeruginosa.
PubMed: 8522505
MedLine:
Source:
J Bacteriol. 1995 Dec;177(24):7019-25.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8522505
Homologs By Global Alignment
Gene ID:483

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
843 PA4309_tr translation of PA4309 629 99.52 99.52 0 3083.0
34504 dbj|BAA09307.1| (D50642) transducer [Pseudomonas aeruginosa] 629 99.52 99.52 0 3083.0
34503 gb|AAG07697.1|AE004847_4 (AE004847) chemotactic transducer PctA [Pseudomonas aeruginosa PAO1] 629 99.52 99.52 0 3083.0
34505 dbj|BAA23412.1| (D86947) chemotactic transducer [Pseudomonas aeruginosa] 629 99.20 99.36 0 3074.0
844 PA4310_tr translation of PA4310 629 82.82 90.46 0 2620.0
GC ORFID: 43485How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4309Glimmer Score:
Start: 4262378Stop: 4264267
Length: 1890
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4309 translation of PA4309Homolog Bit Score 1192.0
Other Homologs: t_PA4310 (ORF: BLASTX 1013.0), t_PA4307 (ORF: BLASTX 910.0), psyr_15may02_Scaffold3_revised_gene4268 (ORF: BLASTX 769.0), psyr_15may02_Scaffold8_revised_gene7599 (ORF: BLASTX 766.0), psyr_15may02_Scaffold1_revised_gene1215 (ORF: BLASTX 743.0), t_PA2561 (ORF: BLASTX 221.0), t_PA4309 (ORF: GLIMMER)
GC ORF Sequence
ATGATCAAAAGTCTGAAGTTCAGCCACAAGATCCTCCTCGCGGCCTCCCTCGTGGTGTTCGCCGCTTTCGCA
CTGTTCACCCTCTACAACGATTACCTGCAGCGCAACGCGATCCGCGAGGACCTCGAAAGCTACCTGCGGGAA
ATGGGTGACGTGACCTCCAGCAACATCCAGAACTGGCTCGGTGGCCGTCTGTTGCTGGTCGAGCAGACCGCC
CAGACCCTGGCCCGCGACCACAGCCCGGAAGCCGTCAGCGCCCTGCTCGAACAGCCGGCCCTGACCTCGACC
TTCAGCTTCACCTACCTCGGCCAGCAGGACGGCGTCTTCACCATGCGCCCGGACAGCCCGATGCCGGCCGGC
TACGATCCGCGCAGCCGGCCCTGGTACAAGGACGCCGTAGCGGCCGGCGGCCTGACCCTGACCGAGCCCTAC
GTCGACGCCGCCACCCAGGAACTGATCATCACCGCGGCGACGCCGGTGAAGGCCGCCGGCAACACCCTCGGC
GTGGTGGGCGGCGACCTCAGCCTGAAGACCCTGGTACAGATCATCAATTCGCTGGACTTCAGCGGCATGGGC
TACGCCTTCCTGGTCAGCGGCGACGGCAAGATCCTGGTGCACCCGGACAAAGAGCAGGTGATGAAGACCCTG
AGCGAGGTCTACCCGCAGAACACGCCGAAGATCGCCACCGGTTTCAGCGAGGCCGAATTGCACGGGCATACC
CGCATCCTCGCCTTTACCCCGATCAAGGGCCTGCCTTCGGTGACCTGGTACCTGGCGCTGTCCATCGACAAG
GACAAGGCCTACGCCATGCTCAGCAAGTTCCGCGTCTCGGCCATCGCCGCCGCGCTGATCTCCATCGTCGCC
ATCCTGGTCCTGCTCGGCCTGCTGATCCGCCTGCTGATGCAGCCGCTGCACCTGATGGGTCGTGCCATGCAG
GACATCGCCCAGGGCGAGGGCGACCTGACCAAGCGCCTCGCCGTGACCAGCCGCGATGAATTCGGCGTGCTC
GGCGATGCCTTCAACCAGTTCGTCGAGCGGATCCATCGCTCGATCCGGGAAGTCGCCGGGACCGCGCACAAA
CTGCACGACGTCTCGCAACTGGTGGTGAACGCCTCGAACTCTTCGATGGCCAACTCCGACGAGCAGTCCAAC
CGCACCAACAGCGTCGCCGCGGCGATCAACGAACTCGGCGCCGCCGCCCAGGAAATCGCCCGCAACGCCGCC
GATGCCTCGCACCATGCGTCCGACGCCAACCACCAGGCCGAAGACGGCAAGCAGGTGGTCGAGCAGACCATC
CGCGCGATGAACGAGCTTTCCGAGAAGATCAGCGCCTCCTGCGCCAACATCGAGGCCCTCAACAGTCGCACG
GTGAACATCGGCCAGATCCTCGAGGTGATCAAGGGCATCTCCGAGCAGACCAACCTGCTCGCCCTCAACGCC
GCCATCGAAGCCGCCCGCGCCGGCGAGGCCGGGCGCGGCTTCGCGGTGGTCGCCGACGAGGTGCGCAACCTG
GCCCATCGCGCCCAGGAATCGGCGCTGCAGATCCAGAAGATGATCGAAGAGCTGCAAGTCGGCGCCCGCGAG
GCGGTGGCCACCATGACCGAGAGCCAGCGCTACAGCCTGGAGAGCGTGGAGATCGCCAACCGTGCCGGCGAA
AGCCTGGGCAGCGTGACCCGGCGGATCGGCGAGATCGACGGGATGAACCAGTCGGTGGCCACCGCCACCGAG
GAACAGACCGCGGTGGTCGACTCGCTGAACATGGACATCACCGAGATCAACACCCTCAACCAGGAAGGCGTG
GAGAACCTCCAGGCCACCCTGCGCGCCTGCGGCGAGCTGGAAACCCAGGCCGGGCGCCTGCGCCAACTGGTG
GACAGCTTCAAGATCTGA