ViewGene

Locus Name:
GeneID:
Location:

GeneID:4829
TrivialName: PA14_36360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36360
PAO1 Ortholog Locus:
Sequence Length:423
Protein Length:140
Start: 3239118
Stop: 3238696
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05575.1|AE004645_9 (AE004645) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 122/140 (87%), Positives = 131/140 (93%)
Sequence:
ATGAGCTTTTCCCGATTCGCCCAACGCCTGTCCAACTGGAGCGGCCGGCCGCCGACCTTCGTCATCGCCCTC
GGATTGATCCTGGCATGGGCGATCAGCGGGCCGTTCTTCGACTTCAACGATACCTGGCAACTGGTGATCAAT
ACCTCGACCACCATCGTTACCTTCCTCATGGTCTTCCTCATCCAGAACACCCAGAACCGCGATACCGATGCG
CTGCACATCAAGATCGACGAACTGCTGCGCAGCACCCGGCGCGCCCACAACGCGCTGCTCGGACTCGACGAC
CTGGACGCCGACACCTTGCGCGAACTGCGTGAGCGCTACCAGCGGATGGGTGAGCGGGATGGAGATACGCCG
CAGGGCGTAGCCAGCGAAGAAGCCCGCGAATGCGCCTGCGAGGAACGACAGCGCGACGCCTGA
Translation:
MSFSRFAQRLSNWSGRPPTFVIALGLILAWAISGPFFDFNDTWQLVINTSTTIVTFLMVFLIQNTQNRDTDA
LHIKIDELLRSTRRAHNALLGLDDLDADTLRELRERYQRMGERDGDTPQGVASEEARECACEERQRDA*
AnnotationID:4834GeneID:4829
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:43
Gene Name:
Confidence Code:3
GeneProduct:putative small intergral membrane protein
Cell Localization:()
Synonyms:PA2187
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5478
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG5478, COG5478, Predicted small integral membrane protein
CD-Length = 141 residues,  97.9% aligned
Score =  171 bits (435), Expect = 2e-44
Identities = 67/138 (48%), Positives = 88/138 (63%)
Genomic Context:
Comment:
ReferenceID:9658
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26799
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32541
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4829_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4829

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7206 PA2187_tr translation of PA2187 141 86.52 92.90 1 647.0
188502 gb|AAG05575.1|AE004645_9 (AE004645) hypothetical protein PA2187 [Pseudomonas aeruginosa PAO1] 141 86.52 92.90 1 647.0
188503 gb|AAL44622.1| (AE009312) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)] 142 43.66 60.56 9 315.0
188504 gb|AAK89595.1| (AE008302) AGR_L_2041p [Agrobacterium tumefaciens str. C58 (Cereon)] 142 43.66 60.56 9 315.0
188508 dbj|BAB48880.1| (AP002997) hypothetical protein [Mesorhizobium loti] 147 40.81 60.54 13 294.0
GC ORFID: 47831How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2187Glimmer Score:
Start: 1714798Stop: 1715220
Length: 423
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2187 translation of PA2187Homolog Bit Score 253.0
Other Homologs: t_PA2187 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCTTTTCCCGATTCGCCCAACGCCTGTCCAACTGGAGCGGCCGGCCGCCGACCTTCGTCATCGCCCTC
GGATTGATCCTGGCATGGGCGATCAGCGGGCCGTTCTTCGACTTCAACGATACCTGGCAACTGGTGATCAAT
ACCTCGACCACCATCGTTACCTTCCTCATGGTCTTCCTCATCCAGAACACCCAGAACCGCGATACCGATGCG
CTGCACATCAAGATCGACGAACTGCTGCGCAGCACCCGGCGCGCCCACAACGCGCTGCTCGGACTCGACGAC
CTGGACGCCGACACCTTGCGCGAACTGCGTGAGCGCTACCAGCGGATGGGTGAGCGGGATGGAGATACGCCG
CAGGGCGTAGCCAGCGAAGAAGCCCGCGAATGCGCCTGCGAGGAACGACAGCGCGACGCCTGA