ViewGene
Locus Name:
GeneID:
Location:

GeneID:4828
TrivialName: PA14_07710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07710
PAO1 Ortholog Locus:PA0591
Sequence Length:381
Protein Length:126
Start: 663359
Stop: 662979
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03980.1|AE004495_4 (AE004495) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/126 (100%), Positives = 126/126 (100%)
Sequence:
ATGAGCGATACCCAGCACCAGGTCAACGTCAGGGTCGACACCCGCTACCTTCCGGAACAGTCCGCCCCGGAG
CAGAACCGTTTCGCCTTCGCCTACACTGTGACCATCGAGAACCAGGGCGAGGTTCCGGCCCAACTGCTGTCG
CGCCACTGGATCATCACCGACGGCGACGGCCGTACCCAGGAAGTTCGCGGCGCCGGCGTGGTCGGCGAGCAA
CCGCTGATCGCCCCCGGCGCGCAACACACCTACACCAGCGGCACGGTGCTGGCGACCCGGGTCGGCAGCATG
CGCGGCAGCTACCAGATGCTCGGCAGCGACGGAATCGCCTTCGACGCCGCGATCCCGGTGTTTCGCCTGGCC
GTACCGGGAGCGCTGCACTGA
Translation:
MSDTQHQVNVRVDTRYLPEQSAPEQNRFAFAYTVTIENQGEVPAQLLSRHWIITDGDGRTQEVRGAGVVGEQ
PLIAPGAQHTYTSGTVLATRVGSMRGSYQMLGSDGIAFDAAIPVFRLAVPGALH*
AnnotationID:4833GeneID:4828
AnnotatorUID: diggins
Modification Date/Time: 2004-08-18 16:04:04
Gene Name:
Confidence Code:3
GeneProduct:putative apaG protein
Cell Localization:()
Synonyms:apaG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54092.1| (AE016857) apaG protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 126

 Score =  184 bits (467), Expect = 8e-47
 Identities = 87/126 (69%), Positives = 105/126 (83%)

>gb|AAN66031.1|AE016232_4 (AE016775) apaG protein [Pseudomonas putida KT2440]
          Length = 126

 Score =  176 bits (447), Expect = 2e-44
 Identities = 83/126 (65%), Positives = 102/126 (80%)

>gb|AAN78559.1|AE016755_59 (AE016755) ApaG protein [Escherichia coli CFT073]
          Length = 125

 Score =  140 bits (352), Expect = 2e-33
 Identities = 63/120 (52%), Positives = 88/120 (73%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9656




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26797




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33877




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4828_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4828
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7205
                           PA0591_tr
                           translation of PA0591
                           126
                           99.99
                           99.99
                           0
                           650.0
     

     
     
188459
                           gb|AAG03980.1|AE004495_4
                           (AE004495) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           126
                           99.99
                           99.99
                           0
                           650.0
     

     
     
188460
                           gb|AAO54092.1|
                           (AE016857) apaG protein [Pseudomonas syringae pv. tomato str. DC3000]
                           126
                           69.04
                           83.33
                           0
                           467.0
     

     
     
188461
                           gb|AAN66031.1|AE016232_4
                           (AE016775) apaG protein [Pseudomonas putida KT2440]
                           126
                           65.87
                           80.95
                           0
                           447.0
     

     
     
188462
                           emb|CAD85484.1|
                           (BX321861) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           127
                           55.90
                           70.07
                           1
                           377.0
     

     






      

          
GC ORFID: 47830How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0591Glimmer Score: 

          
Start: 6464702Stop: 6464322

          
Length: 381


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0591 translation of PA0591Homolog Bit Score 254.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6756 (ORF: BLASTX 181.0), t_PA0591 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGATACCCAGCACCAGGTCAACGTCAGGGTCGACACCCGCTACCTTCCGGAACAGTCCGCCCCGGAG 
CAGAACCGTTTCGCCTTCGCCTACACTGTGACCATCGAGAACCAGGGCGAGGTTCCGGCCCAACTGCTGTCG 
CGCCACTGGATCATCACCGACGGCGACGGCCGTACCCAGGAAGTTCGCGGCGCCGGCGTGGTCGGCGAGCAA 
CCGCTGATCGCCCCCGGCGCGCAACACACCTACACCAGCGGCACGGTGCTGGCGACCCGGGTCGGCAGCATG 
CGCGGCAGCTACCAGATGCTCGGCAGCGACGGAATCGCCTTCGACGCCGCGATCCCGGTGTTTCGCCTGGCC 
GTACCGGGAGCGCTGCACTGA