ViewGene
Locus Name:
GeneID:
Location:

GeneID:4827
TrivialName: PA14_68720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68720
PAO1 Ortholog Locus:PA5202
Sequence Length:390
Protein Length:129
Start: 6128146
Stop: 6128535
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08587.1|AE004933_3 (AE004933) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 129/129 (100%), Positives = 129/129 (100%)
Sequence:
ATGAGCGAGATGCCCGCCCGCGAGCAGATGATCAGCGCCTACAGCGAACTGGTCGGCCTGGACCCGGTCAGC
CTCGGCGACGGAGTCGCCGAGGTACGCCTGCCGATGGCCGCGCACCTGCGCAACCGCGGCGGGGTCATGCAT
GGCGGCGCGCTGTTCTCGCTGATGGACGTGACCATGGGGCTGGCCTGCTCCAGTTCCCATGGTTTCGACCGC
CAGAGCGTCACCCTGGAATGCAAGATCAACTACATCCGCGCCGTCGCCGACGGCGAGGTGCGCTGCGTCGCC
CGCGTCCTCCATGCCGGGCGCCGCAGCCTGGTGGTGGAAGCCGAGGTGCGGCAAGGCGACAAGCTAGTCGCG
AAAGGACAAGGCACCTTCGCCCAGTTGTAA
Translation:
MSEMPAREQMISAYSELVGLDPVSLGDGVAEVRLPMAAHLRNRGGVMHGGALFSLMDVTMGLACSSSHGFDR
QSVTLECKINYIRAVADGEVRCVARVLHAGRRSLVVEAEVRQGDKLVAKGQGTFAQL*
AnnotationID:4832GeneID:4827
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 21:09:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5202
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2050
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2050, PaaI, Uncharacterized protein, possibly involved in aromatic 
compounds catabolism 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 141 residues,  85.1% aligned
Score =  107 bits (269), Expect = 3e-25
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 2/120 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9654




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26795




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34868




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4827_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4827
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7204
                           PA5202_tr
                           translation of PA5202
                           129
                           99.99
                           99.99
                           0
                           649.0
     

     
     
188455
                           gb|AAG08587.1|AE004933_3
                           (AE004933) hypothetical protein PA5202 [Pseudomonas aeruginosa PAO1]
                           129
                           99.99
                           99.99
                           0
                           649.0
     

     
     
188456
                           gb|AAO53871.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           130
                           66.15
                           81.53
                           4
                           444.0
     

     
     
188457
                           gb|AAQ82440.1|
                           (AY374326) hypothetical protein [Pseudomonas syringae pv. syringae]
                           130
                           66.15
                           80.76
                           4
                           441.0
     

     
     
188458
                           gb|AAN65876.1|AE016215_11
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           129
                           65.89
                           80.62
                           2
                           424.0
     

     






      

          
GC ORFID: 47829How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5202Glimmer Score: 

          
Start: 5391832Stop: 5392221

          
Length: 390


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5202 translation of PA5202Homolog Bit Score 254.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3908 (ORF: BLASTX 175.0)

          
GC ORF Sequence

           
ATGAGCGAGATGCCCGCCCGCGAGCAGATGATCAGCGCCTACAGCGAACTGGTCGGCCTGGACCCGGTCAGC 
CTCGGCGACGGAGTCGCCGAGGTACGCCTGCCGATGGCCGCGCACCTGCGCAACCGCGGCGGGGTCATGCAT 
GGCGGCGCGCTGTTCTCGCTGATGGACGTGACCATGGGGCTGGCCTGCTCCAGTTCCCATGGTTTCGACCGC 
CAGAGCGTCACCCTGGAATGCAAGATCAACTACATCCGCGCCGTCGCCGACGGCGAGGTGCGCTGCGTCGCC 
CGCGTCCTCCATGCCGGGCGCCGCAGCCTGGTGGTGGAAGCCGAGGTGCGGCAAGGCGACAAGCTAGTCGCG 
AAAGGACAAGGCACCTTCGCCCAGTTGTAA