ViewGene
Locus Name:
GeneID:
Location:

GeneID:4826
TrivialName: PA14_16840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16840
PAO1 Ortholog Locus:PA3674
Sequence Length:399
Protein Length:132
Start: 1443088
Stop: 1442690
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07062.1|AE004787_2 (AE004787) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 129/132 (97%), Positives = 132/132 (100%)
Sequence:
ATGAAAAAACTGCCATTGCTGCTCGCCGCCAGCGTCCTCGCCGGCTGCGGTACCCAGCAATCGACTTCGAAC
GCCAGCTTCGAGGGTGAGGTCTTCTACCGCGAGCGTATCGCCCTGCCGCCCTCGGCGCGCCTGAGCGTGAGC
CTGGAAGACGTGTCGCTGGCCGACGCCCCTTCGGTGCAGTTGGCCAGCCAGACCCGCGAGATCACCAGCCAG
GTGCCGCTGGCGTTCCACCTGGAGTACGACCCGAAGCAGGTCAAGCCGGGCCACAGCTACGCGGTGAGCGCG
CGCATCGAGCTGAACGGCCGCTTGCTGTTCATCAACACCACCCGCCACTCGGTGAAACTCGACGGCAGCGAC
CCGCAGCCCTATCGCGTGCAGGTCGAATCGGCGCGCTGA
Translation:
MKKLPLLLAASVLAGCGTQQSTSNASFEGEVFYRERIALPPSARLSVSLEDVSLADAPSVQLASQTREITSQ
VPLAFHLEYDPKQVKPGHSYAVSARIELNGRLLFINTTRHSVKLDGSDPQPYRVQVESAR*
AnnotationID:4831GeneID:4826
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 10:10:00
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA3674
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67140.1|AE016342_12 (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
          Length = 132

 Score =  167 bits (424), Expect = 7e-42
 Identities = 84/132 (63%), Positives = 98/132 (74%)

>dbj|BAC59213.1| (AP005076) lipoprotein-related protein [Vibrio parahaemolyticus]
          Length = 144

 Score =  111 bits (278), Expect = 6e-25
 Identities = 64/134 (47%), Positives = 84/134 (62%), Gaps = 8/134 (5%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9652




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26793




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31871




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4826_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4826
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7203
                           PA3674_tr
                           translation of PA3674
                           132
                           97.72
                           99.99
                           0
                           649.0
     

     
     
188452
                           gb|AAG07062.1|AE004787_2
                           (AE004787) hypothetical protein PA3674 [Pseudomonas aeruginosa PAO1]
                           132
                           97.72
                           99.99
                           0
                           649.0
     

     
     
188453
                           gb|AAN67140.1|AE016342_12
                           (AE016779) lipoprotein, putative [Pseudomonas putida KT2440]
                           132
                           63.63
                           74.24
                           0
                           424.0
     

     
     
188454
                           dbj|BAC59213.1|
                           (AP005076) lipoprotein-related protein [Vibrio parahaemolyticus]
                           144
                           47.22
                           61.11
                           12
                           288.0
     

     






      

          
GC ORFID: 47828How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3674Glimmer Score: 

          
Start: 3510849Stop: 3511247

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3674 translation of PA3674Homolog Bit Score 254.0

          
Other Homologs:  t_PA3674 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAAAACTGCCATTGCTGCTCGCCGCCAGCGTCCTCGCCGGCTGCGGTACCCAGCAATCGACTTCGAAC 
GCCAGCTTCGAGGGTGAGGTCTTCTACCGCGAGCGTATCGCCCTGCCGCCCTCGGCGCGCCTGAGCGTGAGC 
CTGGAAGACGTGTCGCTGGCCGACGCCCCTTCGGTGCAGTTGGCCAGCCAGACCCGCGAGATCACCAGCCAG 
GTGCCGCTGGCGTTCCACCTGGAGTACGACCCGAAGCAGGTCAAGCCGGGCCACAGCTACGCGGTGAGCGCG 
CGCATCGAGCTGAACGGCCGCTTGCTGTTCATCAACACCACCCGCCACTCGGTGAAACTCGACGGCAGCGAC 
CCGCAGCCCTATCGCGTGCAGGTCGAATCGGCGCGCTGA