ViewGene
Locus Name:
GeneID:
Location:

GeneID:4825
TrivialName: PA14_39070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39070
PAO1 Ortholog Locus:PA1969
Sequence Length:393
Protein Length:130
Start: 3483373
Stop: 3482981
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05357.1|AE004623_7 (AE004623) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 129/130 (99%), Positives = 129/130 (99%)
Sequence:
ATGCCACTGGTAAGGTGGCGATCCCAGAAGATCAGAGGAGGCGGTATGCCTTTGAAGCAGTTTTCCAGTGCA
CTCGTTCTCGCGGCCCTGCTCGCCGGTTGCAGCAGCAACGGCGACAGCCCGTCCACCGAAGGCGCCAGCGTA
GCCACCGGCAGCGCCAGCGCGCCCGCGGCCACCCCGGCAGCGGACGGCCGTTGCGATGCCAATGCGGTGCAG
GCCTATGTCGGCAAGCAGGCTTCCGCGGCCATCGTCGAGGAGGCCCGCCGCGCCGCCGGAGCGGAAGTCGCC
CGGGCGCTGCGCCCGCACGATGCGGTGACCATGGACTACAACCCGCGCCGGCTGAACATCGATGTCGACGAC
ACGCTGGTGATCAAGCGCCTGTCCTGCGGCTGA
Translation:
MPLVRWRSQKIRGGGMPLKQFSSALVLAALLAGCSSNGDSPSTEGASVATGSASAPAATPAADGRCDANAVQ
AYVGKQASAAIVEEARRAAGAEVARALRPHDAVTMDYNPRRLNIDVDDTLVIKRLSCG*
AnnotationID:4830GeneID:4825
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1969
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55886.1| (AE016864) lipoprotein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 111

 Score = 75.5 bits (184), Expect = 5e-14
 Identities = 44/106 (41%), Positives = 64/106 (60%), Gaps = 5/106 (4%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9650




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26791




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4825
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7202
                           PA1969_tr
                           translation of PA1969
                           130
                           99.23
                           99.23
                           0
                           648.0
     

     
     
188451
                           gb|AAG05357.1|AE004623_7
                           (AE004623) hypothetical protein PA1969 [Pseudomonas aeruginosa PAO1]
                           130
                           99.23
                           99.23
                           0
                           648.0
     

     






      

          
GC ORFID: 47827How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1969Glimmer Score: 

          
Start: 1470538Stop: 1470930

          
Length: 393


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1969 translation of PA1969Homolog Bit Score 254.0

          
Other Homologs:  t_PA1969 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCACTGGTAAGGTGGCGATCCCAGAAGATCAGAGGAGGCGGTATGCCTTTGAAGCAGTTTTCCAGTGCA 
CTCGTTCTCGCGGCCCTGCTCGCCGGTTGCAGCAGCAACGGCGACAGCCCGTCCACCGAAGGCGCCAGCGTA 
GCCACCGGCAGCGCCAGCGCGCCCGCGGCCACCCCGGCAGCGGACGGCCGTTGCGATGCCAATGCGGTGCAG 
GCCTATGTCGGCAAGCAGGCTTCCGCGGCCATCGTCGAGGAGGCCCGCCGCGCCGCCGGAGCGGAAGTCGCC 
CGGGCGCTGCGCCCGCACGATGCGGTGACCATGGACTACAACCCGCGCCGGCTGAACATCGATGTCGACGAC 
ACGCTGGTGATCAAGCGCCTGTCCTGCGGCTGA