ViewGene
Locus Name:
GeneID:
Location:

GeneID:4823
TrivialName: PA14_70170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70170
PAO1 Ortholog Locus:PA5314
Sequence Length:363
Protein Length:120
Start: 6258467
Stop: 6258829
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08699.1|AE004944_3 (AE004944) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 120/120 (100%), Positives = 120/120 (100%)
Sequence:
ATGAACATCGAACAGATCGTCGACTTCGCCCAGGCCAACAGCGCTCCGGAACACTACAGCCCGGCGCCGGAG
AAAATCCTCAAGGGCGACCCGAAACAGAGCGTGCGCAACCACTACGGCAGCCCCTGCGGGCAGTTCAACGCC
GGTATCTGGGAAGGCGCCGTGGGCCAGTGGACGGTGAACTACACCGAACACGAGTACTGCGAGATCATCCAG
GGCGTCTCGGTGCTGCGCGACCGGCACGGCAACGCCAAGACCGTGCGCGCCGGCGACCGCTTCGTGATCCCC
GCCGGCTTCCAGGGCACCTGGGAAGTGCTCGAAGCCTGTCGCAAGGTCTATGTGATCTTCGAAGCCAAGGCC
TGA
Translation:
MNIEQIVDFAQANSAPEHYSPAPEKILKGDPKQSVRNHYGSPCGQFNAGIWEGAVGQWTVNYTEHEYCEIIQ
GVSVLRDRHGNAKTVRAGDRFVIPAGFQGTWEVLEACRKVYVIFEAKA*
AnnotationID:4828GeneID:4823
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 13:01:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5314
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9646




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26787




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34749




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4823_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4823
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7201
                           PA5314_tr
                           translation of PA5314
                           120
                           99.99
                           99.99
                           0
                           651.0
     

     
     
188446
                           gb|AAG08699.1|AE004944_3
                           (AE004944) hypothetical protein PA5314 [Pseudomonas aeruginosa PAO1]
                           120
                           99.99
                           99.99
                           0
                           651.0
     

     
     
188448
                           gb|AAN70844.1|AE016729_2
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           120
                           74.16
                           84.16
                           1
                           501.0
     

     
     
188447
                           gb|AAO53645.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           121
                           71.90
                           84.29
                           1
                           507.0
     

     
     
188449
                           gb|AAN56492.1|AE015786_6
                           (AE015786) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           124
                           51.61
                           68.54
                           4
                           381.0
     

     






      

          
GC ORFID: 47825How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5314Glimmer Score: 

          
Start: 5522156Stop: 5522518

          
Length: 363


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5314 translation of PA5314Homolog Bit Score 255.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3929 (ORF: BLASTX 200.0), t_PA5314 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACATCGAACAGATCGTCGACTTCGCCCAGGCCAACAGCGCTCCGGAACACTACAGCCCGGCGCCGGAG 
AAAATCCTCAAGGGCGACCCGAAACAGAGCGTGCGCAACCACTACGGCAGCCCCTGCGGGCAGTTCAACGCC 
GGTATCTGGGAAGGCGCCGTGGGCCAGTGGACGGTGAACTACACCGAACACGAGTACTGCGAGATCATCCAG 
GGCGTCTCGGTGCTGCGCGACCGGCACGGCAACGCCAAGACCGTGCGCGCCGGCGACCGCTTCGTGATCCCC 
GCCGGCTTCCAGGGCACCTGGGAAGTGCTCGAAGCCTGTCGCAAGGTCTATGTGATCTTCGAAGCCAAGGCC 
TGA