ViewGene
Locus Name:
GeneID:
Location:

GeneID:4822
TrivialName: PA14_68860
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68860
PAO1 Ortholog Locus:PA5214
Sequence Length:390
Protein Length:129
Start: 6143833
Stop: 6143444
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08599.1|AE004934_6 (AE004934) glycine cleavage system protein H1 [Pseudomonas aeruginosa PAO1]
Identities = 128/129 (99%), Positives = 128/129 (99%) to gcvH1 (PA5214) of PAO1.
Sequence:
ATGAGCAATATTCCCGCCGAACTGCGTTACGCCCAGAGCCACGAATGGGCTCGTCTGGAAGCCGACGGCAGC
GTTACCGTGGGCATTTCCGACCATGCCCAGGAAGCCCTTGGCGATGTGGTCTTCATCGAGCTGCCGGAGCTG
GGCAAGACCCTCGCCGCCGGCCAGGAAGCGGGCGTGGTCGAGTCGGTGAAGGCCGCCTCCGACATCTATTCG
CCGATCGGCGGCGAAGTCATCGCTATCAACGAAGCCCTGGCCGACACCCCGGAAGACGTCAACAACGACCCG
TACGCGTCCTGGTTCTTCAAGCTCAAGCCGAGCAATCCGGCCGAGCTGGACAAGCTGCTCGACGCCGCTGGC
TACCAGGCCGCCGTCGACGCGGAAGGCTGA
Translation:
MSNIPAELRYAQSHEWARLEADGSVTVGISDHAQEALGDVVFIELPELGKTLAAGQEAGVVESVKAASDIYS
PIGGEVIAINEALADTPEDVNNDPYASWFFKLKPSNPAELDKLLDAAGYQAAVDAEG*
AnnotationID:4827GeneID:4822
AnnotatorUID: danlee
Modification Date/Time: 2003-10-20 16:04:08
Gene Name:gcvH1
Confidence Code:2
GeneProduct:glycine cleavage system protein H1
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
99% identical to gcvH1 (PA5214) of PAO1.
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9644




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26785




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35757




  
Author/Investigator(s):
        Eur J Biochem. 1993 Sep 1;216(2):539-48.





  
Title:
        Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage system.




  
PubMed:
        8375392


MedLine:
        




    
Source:
Eur J Biochem. 1993 Sep 1;216(2):539-48.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8375392









           
Homologs By Global Alignment 

           

       



     
Gene ID:4822
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7199
                           PA5214_tr
                           translation of PA5214
                           129
                           99.22
                           99.22
                           0
                           651.0
     

     
     
188352
                           gb|AAG08599.1|AE004934_6
                           (AE004934) glycine cleavage system protein H1 [Pseudomonas aeruginosa PAO1]
                           129
                           99.22
                           99.22
                           0
                           651.0
     

     
     
188353
                           gb|AAN70758.1|AE016720_1
                           (AE016793) glycine cleavage system H protein [Pseudomonas putida KT2440]
                           129
                           79.06
                           87.59
                           2
                           536.0
     

     
     
188354
                           gb|AAO53862.1|
                           (AE016857) glycine cleavage system H protein [Pseudomonas syringae pv. tomato str. DC3000]
                           130
                           72.30
                           86.15
                           3
                           497.0
     

     
     
188355
                           gb|AAN53856.1|AE015522_11
                           (AE015522) glycine cleavage system H protein [Shewanella oneidensis MR-1]
                           130
                           65.38
                           79.23
                           2
                           450.0
     

     






      

          
GC ORFID: 47824How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5214Glimmer Score: 

          
Start: 5407519Stop: 5407130

          
Length: 390


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5214 translation of PA5214Homolog Bit Score 255.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3168 (ORF: BLASTX 190.0), t_PA2446 (ORF: BLASTX 132.0), psyr_15may02_Scaffold3_revised_gene4965 (ORF: BLASTX 114.0), t_PA5214 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAATATTCCCGCCGAACTGCGTTACGCCCAGAGCCACGAATGGGCTCGTCTGGAAGCCGACGGCAGC 
GTTACCGTGGGCATTTCCGACCATGCCCAGGAAGCCCTTGGCGATGTGGTCTTCATCGAGCTGCCGGAGCTG 
GGCAAGACCCTCGCCGCCGGCCAGGAAGCGGGCGTGGTCGAGTCGGTGAAGGCCGCCTCCGACATCTATTCG 
CCGATCGGCGGCGAAGTCATCGCTATCAACGAAGCCCTGGCCGACACCCCGGAAGACGTCAACAACGACCCG 
TACGCGTCCTGGTTCTTCAAGCTCAAGCCGAGCAATCCGGCCGAGCTGGACAAGCTGCTCGACGCCGCTGGC 
TACCAGGCCGCCGTCGACGCGGAAGGCTGA