ViewGene

Locus Name:
GeneID:
Location:

GeneID:4821
TrivialName: PA14_62600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62600
PAO1 Ortholog Locus:PA4731
Sequence Length:381
Protein Length:126
Start: 5585136
Stop: 5585516
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08117.1|AE004887_1 (AE004887) aspartate 1-decarboxylase precursor [Pseudomonas aeruginosa PAO1]
Identities = 125/126 (99%), Positives = 126/126 (100%)
Sequence:
ATGCACGCCATCATGCTCAAAGCCAAGTTGCATCGCGCCGAAGTCACCCATGCCGTCCTCGACTACGAAGGC
TCCTGCGCCATCGACGGCGATTGGCTGGACCTCTCCGGAATCCGCGAGTACGAACAGATCCAGATCTACAAC
GTCGACAACGGCGAGCGCTTCACCACCTATGCGATCCGCGCCGAGAACGGCTCGAAGATGATCTCGGTGAAC
GGCGCCGCGGCACACAAGGCCAAGGTCGGCGACCGCGTGATCATCTGCGCCTACGCACACTACAGCGAAGCC
GAACTGGCCAGCCACAAGCCGCGCATGCTGTACATGGCGCCGGGCAACCAGCTCAGCCATACCAGCGAGGCG
ATTCCGATACAGGTCGCCTGA
Translation:
MHAIMLKAKLHRAEVTHAVLDYEGSCAIDGDWLDLSGIREYEQIQIYNVDNGERFTTYAIRAENGSKMISVN
GAAAHKAKVGDRVIICAYAHYSEAELASHKPRMLYMAPGNQLSHTSEAIPIQVA*
AnnotationID:4826GeneID:4821
AnnotatorUID: diggins
Modification Date/Time: 2005-04-27 06:06:46
Gene Name:panD
Confidence Code:2
GeneProduct:aspartate 1-decarboxylase precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02261
Secondary Functional Category(ies):central intermediary metabolism
EC Number:4.1.1.11
Status:ACTIVE
Pathway:
Homology:
>gb|AAO60162.1| (AY210414) aspartate 1-decarboxylase precursor; PanD [Pseudomonas
           fluorescens]
          Length = 126

 Score =  233 bits (595), Expect = 1e-61
 Identities = 113/126 (89%), Positives = 119/126 (94%)

>gb|AAM84371.1|AE013681_1 (AE013681) aspartate 1-decarboxylase [Yersinia pestis KIM]
          Length = 126

 Score =  145 bits (366), Expect = 4e-35
 Identities = 72/122 (59%), Positives = 90/122 (73%)

>gb|AAN78654.1|AE016755_154 (AE016755) Aspartate 1-decarboxylase precursor [Escherichia coli
           CFT073]
          Length = 126

 Score =  138 bits (347), Expect = 6e-33
 Identities = 69/122 (56%), Positives = 89/122 (72%)
Structural Features:
pfam02261, Asp_decarbox, Aspartate decarboxylase.
CD-Length = 116 residues,  98.3% aligned
Score =  144 bits (364), Expect = 3e-36
Identities = 55/114 (48%), Positives = 73/114 (64%)
Genomic Context:
Comment:
ReferenceID:9642
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26783
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37645
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4821_cdd.html
URL:
ReferenceID:37736
Author/Investigator(s): Merkel WK, Nichols BP.
Title: Characterization and sequence of the Escherichia coli panBCD gene cluster.
PubMed: 8837478
MedLine:
Source:
FEMS Microbiol Lett. 1996 Oct 1;143(2-3):247-52.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8837478
Homologs By Global Alignment
Gene ID:4821

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7198 PA4731_tr translation of PA4731 126 99.20 99.99 0 652.0
188312 gb|AAG08117.1|AE004887_1 (AE004887) aspartate 1-decarboxylase precursor [Pseudomonas aeruginosa PAO1] 126 99.20 99.99 0 652.0
188313 gb|AAO60162.1| (AY210414) aspartate 1-decarboxylase precursor; PanD [Pseudomonas fluorescens] 126 89.68 94.44 0 595.0
188314 gb|AAM84371.1|AE013681_1 (AE013681) aspartate 1-decarboxylase [Yersinia pestis KIM] 126 57.93 72.22 0 366.0
188315 emb|CAC92633.1| (AJ414157) aspartate 1-decarboxylase precursor [Yersinia pestis CO92] 126 57.93 72.22 0 366.0
GC ORFID: 47823How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4731Glimmer Score:
Start: 4848816Stop: 4849196
Length: 381
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4731 translation of PA4731Homolog Bit Score 255.0
Other Homologs: t_PA4731 (ORF: GLIMMER)
GC ORF Sequence
ATGCACGCCATCATGCTCAAAGCCAAGTTGCATCGCGCCGAAGTCACCCATGCCGTCCTCGACTACGAAGGC
TCCTGCGCCATCGACGGCGATTGGCTGGACCTCTCCGGAATCCGCGAGTACGAACAGATCCAGATCTACAAC
GTCGACAACGGCGAGCGCTTCACCACCTATGCGATCCGCGCCGAGAACGGCTCGAAGATGATCTCGGTGAAC
GGCGCCGCGGCACACAAGGCCAAGGTCGGCGACCGCGTGATCATCTGCGCCTACGCACACTACAGCGAAGCC
GAACTGGCCAGCCACAAGCCGCGCATGCTGTACATGGCGCCGGGCAACCAGCTCAGCCATACCAGCGAGGCG
ATTCCGATACAGGTCGCCTGA