ViewGene
Locus Name:
GeneID:
Location:

GeneID:4820
TrivialName: PA14_57250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57250
PAO1 Ortholog Locus:PA4405
Sequence Length:396
Protein Length:131
Start: 5101378
Stop: 5101773
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07793.1|AE004856_4 (AE004856) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/131 (99%), Positives = 131/131 (100%)
Sequence:
ATGCTATTCGCCGAAGCCCAGCGCATCTGCCGCCTGCAGCAACTGCTGGAAAGCCAGTTGCAACCGGCGGCG
CGCCCGTACTGCCATGTGGCTTCGTGGCGCGGCGGTTGCCTGCTGCTGATCGTCACCGATGGCCACTGGGCC
ACACGCCTGCGCTATCAGCAGCGGCGCCTGCAGCGGCAGCTGCAAGCTTTCGAAGAATTCGCGAACTTAGCG
AAAATCCTTTTCAAGGTGCAACCCACCACGTCCACACAACGTGCGGCACGTCGCAGCTTGACCCTGTCTGCC
GTCGCGGCGGAAAACCTTCGCGAATCCGCCGACATCGTCGGCAATCCACGCCTGCGGGAAGCGCTCGAGCGG
TTGGCAAGCCGCGCCGAGAAAAGCCGGCAAGAATAA
Translation:
MLFAEAQRICRLQQLLESQLQPAARPYCHVASWRGGCLLLIVTDGHWATRLRYQQRRLQRQLQAFEEFANLA
KILFKVQPTTSTQRAARRSLTLSAVAAENLRESADIVGNPRLREALERLASRAEKSRQE*
AnnotationID:4825GeneID:4820
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 14:02:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4405
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9640




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26781




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:28214




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4820_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4820
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7197
                           PA4405_tr
                           translation of PA4405
                           131
                           99.23
                           99.99
                           0
                           652.0
     

     
     
188309
                           gb|AAG07793.1|AE004856_4
                           (AE004856) hypothetical protein PA4405 [Pseudomonas aeruginosa PAO1]
                           131
                           99.23
                           99.99
                           0
                           652.0
     

     
     
188310
                           gb|AAO57850.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           155
                           51.61
                           64.51
                           26
                           406.0
     

     
     
188311
                           gb|AAN66967.1|AE016325_3
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           211
                           35.07
                           45.02
                           82
                           366.0
     

     






      

          
GC ORFID: 47822How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4405Glimmer Score: 

          
Start: 4365054Stop: 4365449

          
Length: 396


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4405 translation of PA4405Homolog Bit Score 255.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene321 (ORF: BLASTX 191.0), t_PA4405 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTATTCGCCGAAGCCCAGCGCATCTGCCGCCTGCAGCAACTGCTGGAAAGCCAGTTGCAACCGGCGGCG 
CGCCCGTACTGCCATGTGGCTTCGTGGCGCGGCGGTTGCCTGCTGCTGATCGTCACCGATGGCCACTGGGCC 
ACACGCCTGCGCTATCAGCAGCGGCGCCTGCAGCGGCAGCTGCAAGCTTTCGAAGAATTCGCGAACTTAGCG 
AAAATCCTTTTCAAGGTGCAACCCACCACGTCCACACAACGTGCGGCACGTCGCAGCTTGACCCTGTCTGCC 
GTCGCGGCGGAAAACCTTCGCGAATCCGCCGACATCGTCGGCAATCCACGCCTGCGGGAAGCGCTCGAGCGG 
TTGGCAAGCCGCGCCGAGAAAAGCCGGCAAGAATAA