ViewGene

Locus Name:
GeneID:
Location:

GeneID: 482

TrivialName: PA14_26750

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_26750

PAO1 Ortholog Locus: PA2886

Sequence Length: 1803

Protein Length: 600

Start: 2331523

Stop: 2329721

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06274.1|AE004714_11 (AE004714) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 597/600 (99%), Positives = 598/600 (99%)

Sequence:

ATGCAAAAGACCGTACGCATCGGCTGCGCCTCGGCCTTCTGGGGCGACACCTGCACCGCGGCCGCCCAGCTG
GTGCGCGGCGCGCCGCTGGACTACCTGGTGTTCGACTACCTGGCCGAGATCACCATGTCGATCATGGCCGGC
GCCCGCCTGAAACAGCCGGACGCCGGCTACGCCACCGATTTCGTCGAGGTCCTCGCACCGCTGCTGGGCGAG
ATAGCCGAGAAGAAGATCCGCGTCATCAGCAACGCTGGCGGGATCAATCCGCAGGCCTGTGCCGCCACCCTC
GCCGCGGCCTGCGAGAAGGCCGGGGTGCAGTTGAAGATCGCCGTGCTCCATGGCGACAACCTGCAAGCGCGC
CAGGCCGAACTGGCCAAGTCCGGCATCCGCGAGATGTTCAGCGACGCGCCTTTCCCGCCGATGTGCGTCTCG
CTCAACGCCTACCTCGGCGCGCCGGGCATCGTCGAGGCCCTGCGCCTGGGCGCGGACATCGTGATCACCGGC
CGGGTGGTCGACAGCGCGGTGGTCAGCGCCGCCCTGGTGCACGAGTTCGGCTGGGCCTGGGACGACTACGAC
CGACTGGCCCAGGCCGCCCTCGCCGGGCACATCGTCGAATGCGGCGCGCAATGCACCGGCGGCAATTTCACC
GACTGGGAGCAGGTGCCGGACTACGAGCACATCGGCTTCCCCATCGTCGAGGTCGAGGCCGACGGGCGCTTC
GTAGTGACCAAGGCGCCCGGCACCGGTGGCCTGGTCAGCGAACTGAGCGTCGGCGAACAGATGCTCTACGAG
ATCGGCGACCCACGCGCCTACCTGCTGCCCGACGTGGTCTGCGACTTCACCGAGGTGCGCCTGCGCCAGGCC
GGTCCCGACCGGGTCGCGGTGGAAGGCGCGCGCGGCCTGCCGCCCACCGACCGGTACAAGGTCAGCGCCACC
TATCCGGACGGTTTCCGCTGCACCGCCAGTTGCCTGATCGCCGGCATCGATGCGCTGAAGAAGGCCGAGCGG
GTCAGCCAGGCGATCATCGCCAGGACCGAGGAAATCTTCGCCGAGCGCGGCTGGGAGCCCTACCGCGAGGTC
AATGTCGAACTGCTCGGCAGCGAAGCCACCTATGGTCCCCATGGGCGACGGCAGGACAGCCGCGAAGTGGTG
GTCAAGCTGGCCGTCCGGCATCCGCGCAAGGAAGCCCTGGTGCTGTTCTCCCGCGAGATCGCCCAGGCCGCC
ACCGGGATGGCGCCCGGCCTGACCGGCATCGTCGGCGGCCGGCCGACGGTGTATCCGGTGATCCGCCTGTTC
TCTTTCCTGATCGACAAGGCGCAATGCGCGTTGAGCGTGGAGATCGACGGCCAGCGCCATCCGCTGGAACTG
CCGGTCCTCGAAGCCTTCGACCCGGCACGATTGGCCGAGGCGCGCCAGCCGCCACGCCCGGAGCAGCCCGCC
AGCGCCAGCGTGCCGCTGGTGAAGCTGGCGGTGGCACGCTCCGGCGACAAGGGCAACCACAGCAACATCGGG
GTCATGGCGCGGCGTCCGGAGTACCTGCCGTGGATCGCCGAGGCGCTGGAGGAAGGCGCGGTGGTGGACTGG
ATGCAGCATGTGCTCGACCCGCAGACCGGCCGGGTCGGCCGCTGGTACCTGCCGGGCAGCCACAGCCTGAAC
TTCCTGCTGGAGAACGCCCTCGGCGGCGGCGGCGTCGCCAGCCTGCGCATCGACCCGCAGGGCAAGGCCTTC
GCCCAGCAGTTGCTGGAGTTCCCGGTGGCGGTGCCGCAGGCGCTCGCCGACGCGCTGGAAACGCAGGGCAGA
TAA

Translation:

MQKTVRIGCASAFWGDTCTAAAQLVRGAPLDYLVFDYLAEITMSIMAGARLKQPDAGYATDFVEVLAPLLGE
IAEKKIRVISNAGGINPQACAATLAAACEKAGVQLKIAVLHGDNLQARQAELAKSGIREMFSDAPFPPMCVS
LNAYLGAPGIVEALRLGADIVITGRVVDSAVVSAALVHEFGWAWDDYDRLAQAALAGHIVECGAQCTGGNFT
DWEQVPDYEHIGFPIVEVEADGRFVVTKAPGTGGLVSELSVGEQMLYEIGDPRAYLLPDVVCDFTEVRLRQA
GPDRVAVEGARGLPPTDRYKVSATYPDGFRCTASCLIAGIDALKKAERVSQAIIARTEEIFAERGWEPYREV
NVELLGSEATYGPHGRRQDSREVVVKLAVRHPRKEALVLFSREIAQAATGMAPGLTGIVGGRPTVYPVIRLF
SFLIDKAQCALSVEIDGQRHPLELPVLEAFDPARLAEARQPPRPEQPASASVPLVKLAVARSGDKGNHSNIG
VMARRPEYLPWIAEALEEGAVVDWMQHVLDPQTGRVGRWYLPGSHSLNFLLENALGGGGVASLRIDPQGKAF
AQQLLEFPVAVPQALADALETQGR*

AnnotationID:491 GeneID:482

AnnotatorUID: diggins

Modification Date/Time: 2005-04-07 11:11:27

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2886

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:967

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18109

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36168

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 482_cdd.html

URL:

Homologs By Global Alignment

Gene ID:482

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

842 PA2886_tr translation of PA2886 600 99.50 99.66 0 3083.0

34502 gb|AAG06274.1|AE004714_11 (AE004714) hypothetical protein PA2886 [Pseudomonas aeruginosa PAO1] 600 99.50 99.66 0 3083.0

GC ORFID: `43484`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2886`	Glimmer Score:
Start: `2622403`	Stop: `2624205`
Length: `1803`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA2886 translation of PA2886`	Homolog Bit Score `1192.0`
Other Homologs: `t_PA2886 (ORF: GLIMMER)`
GC ORF Sequence
ATGCAAAAGACCGTACGCATCGGCTGCGCCTCGGCCTTCTGGGGCGACACCTGCACCGCGGCCGCCCAGCTG GTGCGCGGCGCGCCGCTGGACTACCTGGTGTTCGACTACCTGGCCGAGATCACCATGTCGATCATGGCCGGC GCCCGCCTGAAACAGCCGGACGCCGGCTACGCCACCGATTTCGTCGAGGTCCTCGCACCGCTGCTGGGCGAG ATAGCCGAGAAGAAGATCCGCGTCATCAGCAACGCTGGCGGGATCAATCCGCAGGCCTGTGCCGCCACCCTC GCCGCGGCCTGCGAGAAGGCCGGGGTGCAGTTGAAGATCGCCGTGCTCCATGGCGACAACCTGCAAGCGCGC CAGGCCGAACTGGCCAAGTCCGGCATCCGCGAGATGTTCAGCGACGCGCCTTTCCCGCCGATGTGCGTCTCG CTCAACGCCTACCTCGGCGCGCCGGGCATCGTCGAGGCCCTGCGCCTGGGCGCGGACATCGTGATCACCGGC CGGGTGGTCGACAGCGCGGTGGTCAGCGCCGCCCTGGTGCACGAGTTCGGCTGGGCCTGGGACGACTACGAC CGACTGGCCCAGGCCGCCCTCGCCGGGCACATCGTCGAATGCGGCGCGCAATGCACCGGCGGCAATTTCACC GACTGGGAGCAGGTGCCGGACTACGAGCACATCGGCTTCCCCATCGTCGAGGTCGAGGCCGACGGGCGCTTC GTAGTGACCAAGGCGCCCGGCACCGGTGGCCTGGTCAGCGAACTGAGCGTCGGCGAACAGATGCTCTACGAG ATCGGCGACCCACGCGCCTACCTGCTGCCCGACGTGGTCTGCGACTTCACCGAGGTGCGCCTGCGCCAGGCC GGTCCCGACCGGGTCGCGGTGGAAGGCGCGCGCGGCCTGCCGCCCACCGACCGGTACAAGGTCAGCGCCACC TATCCGGACGGTTTCCGCTGCACCGCCAGTTGCCTGATCGCCGGCATCGATGCGCTGAAGAAGGCCGAGCGG GTCAGCCAGGCGATCATCGCCAGGACCGAGGAAATCTTCGCCGAGCGCGGCTGGGAGCCCTACCGCGAGGTC AATGTCGAACTGCTCGGCAGCGAAGCCACCTATGGTCCCCATGGGCGACGGCAGGACAGCCGCGAAGTGGTG GTCAAGCTGGCCGTCCGGCATCCGCGCAAGGAAGCCCTGGTGCTGTTCTCCCGCGAGATCGCCCAGGCCGCC ACCGGGATGGCGCCCGGCCTGACCGGCATCGTCGGCGGCCGGCCGACGGTGTATCCGGTGATCCGCCTGTTC TCTTTCCTGATCGACAAGGCGCAATGCGCGTTGAGCGTGGAGATCGACGGCCAGCGCCATCCGCTGGAACTG CCGGTCCTCGAAGCCTTCGACCCGGCACGATTGGCCGAGGCGCGCCAGCCGCCACGCCCGGAGCAGCCCGCC AGCGCCAGCGTGCCGCTGGTGAAGCTGGCGGTGGCACGCTCCGGCGACAAGGGCAACCACAGCAACATCGGG GTCATGGCGCGGCGTCCGGAGTACCTGCCGTGGATCGCCGAGGCGCTGGAGGAAGGCGCGGTGGTGGACTGG ATGCAGCATGTGCTCGACCCGCAGACCGGCCGGGTCGGCCGCTGGTACCTGCCGGGCAGCCACAGCCTGAAC TTCCTGCTGGAGAACGCCCTCGGCGGCGGCGGCGTCGCCAGCCTGCGCATCGACCCGCAGGGCAAGGCCTTC GCCCAGCAGTTGCTGGAGTTCCCGGTGGCGGTGCCGCAGGCGCTCGCCGACGCGCTGGAAACGCAGGGCAGA TAA