ViewGene

Locus Name:
GeneID:
Location:

GeneID:4819
TrivialName: PA14_57580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57580
PAO1 Ortholog Locus:PA4432
Sequence Length:393
Protein Length:130
Start: 5129059
Stop: 5128667
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07820.1|AE004857_11 (AE004857) 30S ribosomal protein S9 [Pseudomonas aeruginosa PAO1]
Identities = 130/130 (100%), Positives = 130/130 (100%)
Sequence:
ATGTCGGCGACTCAAAATTACGGCACTGGCCGTCGTAAGACCGCTACCGCTCGCGTCTTCCTGCGTCCGGGT
ACTGGCAAGATTTCCATCAACAACCGTGGTCTCGATCAGTTCTTCGGTCGTGAAACCGCTCGCATGGTCGTG
CGTCAGCCGCTCGAGCTGACCGAGACCGTCGAGAAGTTCGACATCTTCGTTACCGTCGTTGGCGGTGGCGTA
AGCGGTCAGGCCGGTGCGATCCGTCACGGCATCACCCGTGCCCTGATCGAGTACGACGAAACCCTGCGTAGC
TCGCTGCGCAAGGCCGGCTACGTGACTCGCGATGCCCGTGAAGTCGAGCGTAAGAAAGTCGGTCTGCGTAAA
GCGCGTAAGCGTCCGCAGTACTCCAAGCGTTAA
Translation:
MSATQNYGTGRRKTATARVFLRPGTGKISINNRGLDQFFGRETARMVVRQPLELTETVEKFDIFVTVVGGGV
SGQAGAIRHGITRALIEYDETLRSSLRKAGYVTRDAREVERKKVGLRKARKRPQYSKR*
AnnotationID:4824GeneID:4819
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 19:07:54
Gene Name:rpsI
Confidence Code:2
GeneProduct:ribosomal protein S9
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0103,pfam00380
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57874.1| (AE016871) ribosomal protein S9 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 130

 Score =  241 bits (615), Expect = 5e-64
 Identities = 120/130 (92%), Positives = 126/130 (96%)

>gb|AAN66940.1|AE016322_7 (AE016778) ribosomal protein S9 [Pseudomonas putida KT2440]
          Length = 130

 Score =  238 bits (608), Expect = 3e-63
 Identities = 120/130 (92%), Positives = 125/130 (96%)
Structural Features:
COG0103, RpsI, Ribosomal protein S9 
[Translation, ribosomal structure and biogenesis]
CD-Length = 130 residues, 100.0% aligned
Score =  178 bits (452), Expect = 5e-46
Identities = 86/130 (66%), Positives = 101/130 (77%)

pfam00380, Ribosomal_S9, Ribosomal protein S9/S16. 
CD-Length = 121 residues, 100.0% aligned
Score =  136 bits (345), Expect = 1e-33
Identities = 66/121 (54%), Positives = 79/121 (65%)
Genomic Context:
Comment:
ReferenceID:9638
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26779
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31471
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4819_cdd.html
URL:
ReferenceID:32816
Author/Investigator(s): Isono S, Thamm S, Kitakawa M, Isono K.
Title: Cloning and nucleotide sequencing of the genes for ribosomal proteins S9 (rpsI) and L13 (rplM) of Escherichia coli.
PubMed: 3884974
MedLine:
Source:
Mol Gen Genet. 1985;198(2):279-82.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3884974
ReferenceID:32817
Author/Investigator(s): Dabbs ER.
Title: Escherichia coli kasugamycin dependence arising from mutation at the rpsI locus.
PubMed: 6337124
MedLine:
Source:
J Bacteriol. 1983 Feb;153(2):709-15.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6337124
Homologs By Global Alignment
Gene ID:4819

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7196 PA4432_tr translation of PA4432 130 99.99 99.99 0 652.0
188172 gb|AAG07820.1|AE004857_11 (AE004857) 30S ribosomal protein S9 [Pseudomonas aeruginosa PAO1] 130 99.99 99.99 0 652.0
188173 gb|AAO57874.1| (AE016871) ribosomal protein S9 [Pseudomonas syringae pv. tomato str. DC3000] 130 92.30 96.92 0 615.0
188174 gb|AAN66940.1|AE016322_7 (AE016778) ribosomal protein S9 [Pseudomonas putida KT2440] 130 92.30 96.15 0 608.0
188175 gb|AAK02605.1| (AE006087) RpS9 [Pasteurella multocida] 130 76.92 90.76 0 529.0
GC ORFID: 47821How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4432Glimmer Score:
Start: 4392738Stop: 4392346
Length: 393
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4432 translation of PA4432Homolog Bit Score 255.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene2031 (ORF: BLASTX 241.0), t_PA4432 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGGCGACTCAAAATTACGGCACTGGCCGTCGTAAGACCGCTACCGCTCGCGTCTTCCTGCGTCCGGGT
ACTGGCAAGATTTCCATCAACAACCGTGGTCTCGATCAGTTCTTCGGTCGTGAAACCGCTCGCATGGTCGTG
CGTCAGCCGCTCGAGCTGACCGAGACCGTCGAGAAGTTCGACATCTTCGTTACCGTCGTTGGCGGTGGCGTA
AGCGGTCAGGCCGGTGCGATCCGTCACGGCATCACCCGTGCCCTGATCGAGTACGACGAAACCCTGCGTAGC
TCGCTGCGCAAGGCCGGCTACGTGACTCGCGATGCCCGTGAAGTCGAGCGTAAGAAAGTCGGTCTGCGTAAA
GCGCGTAAGCGTCCGCAGTACTCCAAGCGTTAA