ViewGene

Locus Name:
GeneID:
Location:

GeneID:4817
TrivialName: PA14_19680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19680
PAO1 Ortholog Locus:PA3432
Sequence Length:390
Protein Length:129
Start: 1698525
Stop: 1698914
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06820.1|AE004764_6 (AE004764) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 129/129 (100%), Positives = 129/129 (100%)
Sequence:
ATGTTGCCCCCGCTCGTCCGCCGTCTGTCCCGCCTTGCCGCCGAACTGGCGGTACTCATCGCCTTCTGGTGG
GCCGGCGGCTGGCTGGCGAAGGCCATCGGCCTGCCGCTGCCGGGCGGGGTGGTCGGCCTGGCGGCGCTGTTG
CTGCTGTTCGCCAGCGGCCTGCTGCGTCCGGCCTGGCTGCAGGCCGGCGCCGGCCTGTTGCTGGCGGAGATG
TTGCTGTTCTTCATCCCGGCGCTGATGAGCCTGCTCGACTACGGCGCGCTGCTACGCAGCGAGGGCTGGCGC
ATCCTCCTGGTGATCATGCTCAGCACCCTGCTGGTGATGCTGGTCACCGCGGTGTCGGTGGAGTGGATGTGC
CGCTGGAGGGCGCGCCATGAGTCTCGATAA
Translation:
MLPPLVRRLSRLAAELAVLIAFWWAGGWLAKAIGLPLPGGVVGLAALLLLFASGLLRPAWLQAGAGLLLAEM
LLFFIPALMSLLDYGALLRSEGWRILLVIMLSTLLVMLVTAVSVEWMCRWRARHESR*
AnnotationID:4822GeneID:4817
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:21
Gene Name:
Confidence Code:3
GeneProduct:putative murein hydrolase exporter
Cell Localization:()
Synonyms:PA3432
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03788,COG1380
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70199.1|AE016659_5 (AE016791) LrgA family protein [Pseudomonas putida KT2440]
          Length = 128

 Score =  169 bits (429), Expect = 2e-42
 Identities = 85/127 (66%), Positives = 104/127 (81%)

>gb|AAL52778.1| (AE009595) murein hydrolase exporter [Brucella melitensis 16M]
          Length = 117

 Score =  103 bits (256), Expect = 2e-22
 Identities = 52/115 (45%), Positives = 78/115 (67%)

>gb|AAL23095.1| (AE008900) putative inner membrane protein [Salmonella typhimurium
           LT2]
          Length = 136

 Score = 84.7 bits (208), Expect = 8e-17
 Identities = 46/127 (36%), Positives = 79/127 (62%), Gaps = 1/127 (0%)

Structural Features:
pfam03788, LrgA, LrgA family. This family is uncharacterised. It contains 
the protein LrgA that has been hypothesised to export murein hydrolases.
CD-Length = 110 residues, 100.0% aligned
Score = 85.6 bits (212), Expect = 2e-18
Identities = 45/110 (40%), Positives = 78/110 (70%)

COG1380, COG1380, Putative effector of murein hydrolase LrgA 
CD-Length = 128 residues,  96.9% aligned
Score = 94.8 bits (236), Expect = 3e-21
Identities = 46/124 (37%), Positives = 83/124 (66%)
Genomic Context:
Comment:
ReferenceID:9634
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26775
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32135
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4817_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4817

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7194 PA3432_tr translation of PA3432 129 99.99 99.99 0 652.0
188167 gb|AAG06820.1|AE004764_6 (AE004764) hypothetical protein PA3432 [Pseudomonas aeruginosa PAO1] 129 99.99 99.99 0 652.0
188168 gb|AAN70199.1|AE016659_5 (AE016791) LrgA family protein [Pseudomonas putida KT2440] 129 65.89 80.62 1 428.0
188170 gb|AAN29274.1|AE014344_9 (AE014344) conserved hypothetical protein [Brucella suis 1330] 140 42.85 61.42 12 249.0
188169 gb|AAL52778.1| (AE009595) murein hydrolase exporter [Brucella melitensis 16M] 129 40.31 60.46 12 254.0
GC ORFID: 47819How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3432Glimmer Score:
Start: 3255407Stop: 3255018
Length: 390
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA3432 translation of PA3432Homolog Bit Score 255.0
Other Homologs: t_PA3432 (ORF: GLIMMER)
GC ORF Sequence
ATGTTGCCCCCGCTCGTCCGCCGTCTGTCCCGCCTTGCCGCCGAACTGGCGGTACTCATCGCCTTCTGGTGG
GCCGGCGGCTGGCTGGCGAAGGCCATCGGCCTGCCGCTGCCGGGCGGGGTGGTCGGCCTGGCGGCGCTGTTG
CTGCTGTTCGCCAGCGGCCTGCTGCGTCCGGCCTGGCTGCAGGCCGGCGCCGGCCTGTTGCTGGCGGAGATG
TTGCTGTTCTTCATCCCGGCGCTGATGAGCCTGCTCGACTACGGCGCGCTGCTACGCAGCGAGGGCTGGCGC
ATCCTCCTGGTGATCATGCTCAGCACCCTGCTGGTGATGCTGGTCACCGCGGTGTCGGTGGAGTGGATGTGC
CGCTGGAGGGCGCGCCATGAGTCTCGATAA