ViewGene
Locus Name:
GeneID:
Location:

GeneID:4816
TrivialName: PA14_21470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21470
PAO1 Ortholog Locus:
Sequence Length:579
Protein Length:192
Start: 1861405
Stop: 1861983
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06680.1|AE004751_6 (AE004751) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 165/171 (96%), Positives = 165/171 (96%)
Sequence:
GTGGCTGCGCGAACAGACCCCCGGCCCCGGCTTTTCCCCGGCGGGAACGAGTCGCGCATGAACGCGCGTGGC
ATCGGCCTTCCCGCCCTGCTTCCGGGGCCCCTGCTGGCCGCAGGCTGCCAGAGCGGGCCAGACATGCTGGCG
GCGCCGGTGATGGGTTCCAACCATACGTCCGCGGCGATCAATTGGTTTTCGGTGAATGGGGCGGGTGGACCG
CGTTTAGACCCTTATCAGGGGGATGGTAGCCAGGTTTGTTGCGGAGTGATTCCAAAGAAGTGGAATCCAAAT
TTGAAAGCTGTCGTGGAATGGGAGAAAGATCCCAAACCGCACGCCGCTATAAGGCGAGATAAATATGGACGG
CTGGATAAAGATGATTACTTGAGACATGCCTCAAGCTACACCCGACACAAGATGATCGTGGATATACCTAGA
TGTAGTGAAAAAATATGCCTGTTGCAGGTGCATTTCCTCCCGTGCGACCAGGTCGCGGTCTCAACAACCTAT
TACAGCCAGGGGCATCCAGAGTATCCAGATAGAAAGTATTTTCAGAAGAGAGAGCCTTCATGCAAAAGCTCT
TGA
Translation:
MAARTDPRPRLFPGGNESRMNARGIGLPALLPGPLLAAGCQSGPDMLAAPVMGSNHTSAAINWFSVNGAGGP
RLDPYQGDGSQVCCGVIPKKWNPNLKAVVEWEKDPKPHAAIRRDKYGRLDKDDYLRHASSYTRHKMIVDIPR
CSEKICLLQVHFLPCDQVAVSTTYYSQGHPEYPDRKYFQKREPSCKSS*
AnnotationID:4821GeneID:4816
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 15:03:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Confirmed frame-shift results in polymorphism compared to PAO1 PA3292.


















    ReferenceID:15188




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26773




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4816
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7193
                           PA3291_tr
                           translation of PA3291
                           199
                           58.79
                           70.35
                           22
                           642.0
     

     
     
188166
                           gb|AAG06679.1|AE004751_5
                           (AE004751) hypothetical protein PA3291 [Pseudomonas aeruginosa PAO1]
                           199
                           58.79
                           70.35
                           22
                           642.0
     

     
     
7192
                           PA3292_tr
                           translation of PA3292
                           304
                           54.27
                           54.27
                           131
                           901.0
     

     
     
188165
                           gb|AAG06680.1|AE004751_6
                           (AE004751) hypothetical protein PA3292 [Pseudomonas aeruginosa PAO1]
                           304
                           54.27
                           54.27
                           131
                           901.0
     

     






      

          
GC ORFID: 47818How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3291Glimmer Score: 

          
Start: 3092526Stop: 3091948

          
Length: 579


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3291 translation of PA3291Homolog Bit Score 255.0

          
Other Homologs:  t_PA3292 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGCTGCGCGAACAGACCCCCGGCCCCGGCTTTTCCCCGGCGGGAACGAGTCGCGCATGAACGCGCGTGGC 
ATCGGCCTTCCCGCCCTGCTTCCGGGGCCCCTGCTGGCCGCAGGCTGCCAGAGCGGGCCAGACATGCTGGCG 
GCGCCGGTGATGGGTTCCAACCATACGTCCGCGGCGATCAATTGGTTTTCGGTGAATGGGGCGGGTGGACCG 
CGTTTAGACCCTTATCAGGGGGATGGTAGCCAGGTTTGTTGCGGAGTGATTCCAAAGAAGTGGAATCCAAAT 
TTGAAAGCTGTCGTGGAATGGGAGAAAGATCCCAAACCGCACGCCGCTATAAGGCGAGATAAATATGGACGG 
CTGGATAAAGATGATTACTTGAGACATGCCTCAAGCTACACCCGACACAAGATGATCGTGGATATACCTAGA 
TGTAGTGAAAAAATATGCCTGTTGCAGGTGCATTTCCTCCCGTGCGACCAGGTCGCGGTCTCAACAACCTAT 
TACAGCCAGGGGCATCCAGAGTATCCAGATAGAAAGTATTTTCAGAAGAGAGAGCCTTCATGCAAAAGCTCT 
TGA