ViewGene

Locus Name:
GeneID:
Location:

GeneID:4814
TrivialName: PA14_72990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72990
PAO1 Ortholog Locus:PA5533
Sequence Length:369
Protein Length:122
Start: 6500327
Stop: 6500695
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08918.1|AE004965_10 (AE004965) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 121/122 (99%), Positives = 121/122 (99%)
Sequence:
ATGCGTCCGTTCCTGTTCTTCCTGTCCTGCCTGCCGGGCCTGGCCCTGGCCGAAGCCTGCATCGTCCATAGC
CAGGCGAAGAATCTCGATGTGAAGGTCTGCCAGCAGAACCGCAGCATCCCGGCCAAGCTGTTCCGCGAAGGC
TTCTGCCAGCCACAACTGCAGGGCCAGAAGGTCGAGGTGGCGTTCGCCGAGGAGTGTCCGACGGGCGCCTTC
GGTGTCTGCCGCGACGCCAGGGTACCCAATGCGCCCTATCGGCAGGACATCTTCTACTACGGCATAGCGACC
GACGCACGCTACCTGGAGCCGTTCTGCGCCAGCCAGAGCCAAGGCCGCTGGGAAGAGCCTAGCGCCGCGAAA
AAGCCCTGA
Translation:
MRPFLFFLSCLPGLALAEACIVHSQAKNLDVKVCQQNRSIPAKLFREGFCQPQLQGQKVEVAFAEECPTGAF
GVCRDARVPNAPYRQDIFYYGIATDARYLEPFCASQSQGRWEEPSAAKKP*
AnnotationID:4819GeneID:4814
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5533
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9628
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26769
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4814

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7190 PA5533_tr translation of PA5533 122 99.18 99.18 0 653.0
188162 gb|AAG08918.1|AE004965_10 (AE004965) hypothetical protein PA5533 [Pseudomonas aeruginosa PAO1] 122 99.18 99.18 0 653.0
188163 gb|AAO58943.1| (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 129 53.48 66.66 13 387.0
GC ORFID: 47816How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5533Glimmer Score:
Start: 5764016Stop: 5764384
Length: 369
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5533 translation of PA5533Homolog Bit Score 256.0
Other Homologs: t_PA5533 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTCCGTTCCTGTTCTTCCTGTCCTGCCTGCCGGGCCTGGCCCTGGCCGAAGCCTGCATCGTCCATAGC
CAGGCGAAGAATCTCGATGTGAAGGTCTGCCAGCAGAACCGCAGCATCCCGGCCAAGCTGTTCCGCGAAGGC
TTCTGCCAGCCACAACTGCAGGGCCAGAAGGTCGAGGTGGCGTTCGCCGAGGAGTGTCCGACGGGCGCCTTC
GGTGTCTGCCGCGACGCCAGGGTACCCAATGCGCCCTATCGGCAGGACATCTTCTACTACGGCATAGCGACC
GACGCACGCTACCTGGAGCCGTTCTGCGCCAGCCAGAGCCAAGGCCGCTGGGAAGAGCCTAGCGCCGCGAAA
AAGCCCTGA