ViewGene
Locus Name:
GeneID:
Location:

GeneID:4813
TrivialName: PA14_60970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60970
PAO1 Ortholog Locus:PA4608
Sequence Length:378
Protein Length:125
Start: 5439358
Stop: 5439735
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07996.1|AE004875_2 (AE004875) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 125/125 (100%), Positives = 125/125 (100%)
Sequence:
ATGAGTGACCAGCACGACGAACGTCGACGTTTCCACCGGATCGCCTTCGACGCCGACAGCGAGATCCTCCAG
GGCGAACGGCGCTGGGAGGTCTTGCTCCACGACGTCTCCCTGCACGGCATCCTGGTCGGCCAGCCGCAGGAC
TGGAACGGCGACCCGCAACGGCCCTTCGAGGCCCGCCTGTACCTGGGCCTGGATGTACTGATCCGCATGGAG
ATCAGCCTGGCCTGGGCTCGCGACGGCCTGCTCGGCTTCGAATGCCAGCACATCGACCTCGACTCCATCAGC
CACCTGCGCCGCCTGGTGGAACTGAACCTGGGCGACGAGGAACTCCTCGAGCGCGAGCTGGCCCTGCTGGTC
AGCGCCCACGACGACTGA
Translation:
MSDQHDERRRFHRIAFDADSEILQGERRWEVLLHDVSLHGILVGQPQDWNGDPQRPFEARLYLGLDVLIRME
ISLAWARDGLLGFECQHIDLDSISHLRRLVELNLGDEELLERELALLVSAHDD*
AnnotationID:4818GeneID:4813
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:47
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4608
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9626




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26767




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4813
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7189
                           PA4608_tr
                           translation of PA4608
                           125
                           99.99
                           99.99
                           0
                           655.0
     

     
     
188158
                           gb|AAG07996.1|AE004875_2
                           (AE004875) hypothetical protein PA4608 [Pseudomonas aeruginosa PAO1]
                           125
                           99.99
                           99.99
                           0
                           655.0
     

     
     
188159
                           gb|AAO58085.1|
                           (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           125
                           48.80
                           68.80
                           3
                           327.0
     

     
     
188161
                           gb|AAN54295.1|AE015567_1
                           (AE015567) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           133
                           44.36
                           60.15
                           11
                           253.0
     

     
     
188160
                           gb|AAN70215.1|AE016661_1
                           (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440]
                           133
                           42.85
                           60.15
                           13
                           278.0
     

     






      

          
GC ORFID: 47815How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4608Glimmer Score: 

          
Start: 4703038Stop: 4703415

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4608 translation of PA4608Homolog Bit Score 256.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5648 (ORF: BLASTX 124.0), t_PA4608 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGACCAGCACGACGAACGTCGACGTTTCCACCGGATCGCCTTCGACGCCGACAGCGAGATCCTCCAG 
GGCGAACGGCGCTGGGAGGTCTTGCTCCACGACGTCTCCCTGCACGGCATCCTGGTCGGCCAGCCGCAGGAC 
TGGAACGGCGACCCGCAACGGCCCTTCGAGGCCCGCCTGTACCTGGGCCTGGATGTACTGATCCGCATGGAG 
ATCAGCCTGGCCTGGGCTCGCGACGGCCTGCTCGGCTTCGAATGCCAGCACATCGACCTCGACTCCATCAGC 
CACCTGCGCCGCCTGGTGGAACTGAACCTGGGCGACGAGGAACTCCTCGAGCGCGAGCTGGCCCTGCTGGTC 
AGCGCCCACGACGACTGA