ViewGene
Locus Name:
GeneID:
Location:

GeneID:4812
TrivialName: PA14_57490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57490
PAO1 Ortholog Locus:PA4424
Sequence Length:378
Protein Length:125
Start: 5123078
Stop: 5123455
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07812.1|AE004857_3 (AE004857) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 125/125 (100%), Positives = 125/125 (100%)
Sequence:
TTGACCGATAGGGAAAGCTCCCGGGACAAGGGGCGCCAGGCCGAGGAACTGGCCTGCGCCCATCTACGGCGA
CAGGGCCTTGCCACACTTGGCAAGAATTGGACCTGTCGCCGCGGAGAGCTCGATCTGGTCATGCTCGACGGC
GATACAGTAGTATTCGTCGAAGTCCGCTCCCGCCGGCATCGCGCCTGGGGCGGAGCCCTGGAGAGCATCGAC
GCGCGCAAGCGGCAGCGCCTGATTCTCTCCGCCGAACTTTTTCTGCAACAGGAGGCGCGCTGGGCCAAACGC
CCCTGTCGCTTCGATGTGGTCACCGTCGATACCAGCGACGGACAATCACCACCGCGACTGGACTGGATTCAG
AACGCATTCGACGCCTGA
Translation:
MTDRESSRDKGRQAEELACAHLRRQGLATLGKNWTCRRGELDLVMLDGDTVVFVEVRSRRHRAWGGALESID
ARKRQRLILSAELFLQQEARWAKRPCRFDVVTVDTSDGQSPPRLDWIQNAFDA*
AnnotationID:4817GeneID:4812
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 19:07:11
Gene Name:
Confidence Code:3
GeneProduct:putative endonuclease
Cell Localization:()
Synonyms:PA4424
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0792
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0792, Predicted endonuclease distantly related to 
archaeal Holliday junction resolvase 
[DNA replication, recombination, and repair]
D-Length = 114 residues, 100.0% aligned
Score =  128 bits (324), Expect = 3e-31
Identities = 51/119 (42%), Positives = 73/119 (61%), Gaps = 5/119 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15186




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26765




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31465




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4812_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4812
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7188
                           PA4424_tr
                           translation of PA4424
                           125
                           99.99
                           99.99
                           0
                           654.0
     

     
     
188155
                           gb|AAG07812.1|AE004857_3
                           (AE004857) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           125
                           99.20
                           99.99
                           0
                           652.0
     

     
     
188156
                           gb|AAO57869.1|
                           (AE016871) conserved hypothetical protein TIGR00252 [Pseudomonas syringae pv. tomato str. DC3000]
                           129
                           54.26
                           73.64
                           5
                           367.0
     

     
     
188157
                           gb|AAN66948.1|AE016323_1
                           (AE016779) conserved hypothetical protein TIGR00252 [Pseudomonas putida KT2440]
                           125
                           53.60
                           67.20
                           1
                           332.0
     

     






      

          
GC ORFID: 47814How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4424Glimmer Score: 

          
Start: 4386757Stop: 4387134

          
Length: 378


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4424 translation of PA4424Homolog Bit Score 256.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2009 (ORF: BLASTX 160.0), t_PA4424 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGACCGATAGGGAAAGCTCCCGGGACAAGGGGCGCCAGGCCGAGGAACTGGCCTGCGCCCATCTACGGCGA 
CAGGGCCTTGCCACACTTGGCAAGAATTGGACCTGTCGCCGCGGAGAGCTCGATCTGGTCATGCTCGACGGC 
GATACAGTAGTATTCGTCGAAGTCCGCTCCCGCCGGCATCGCGCCTGGGGCGGAGCCCTGGAGAGCATCGAC 
GCGCGCAAGCGGCAGCGCCTGATTCTCTCCGCCGAACTTTTTCTGCAACAGGAGGCGCGCTGGGCCAAACGC 
CCCTGTCGCTTCGATGTGGTCACCGTCGATACCAGCGACGGACAATCACCACCGCGACTGGACTGGATTCAG 
AACGCATTCGACGCCTGA