ViewGene
Locus Name:
GeneID:
Location:

GeneID:4811
TrivialName: PA14_09130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09130
PAO1 Ortholog Locus:PA4237
Sequence Length:390
Protein Length:129
Start: 772440
Stop: 772829
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07625.1|AE004841_3 (AE004841) 50S ribosomal protein L17 [Pseudomonas aeruginosa PAO1]
Identities = 129/129 (100%), Positives = 129/129 (100%)
Sequence:
ATGCGCCATCGTAAAAGTGGTCGTCACCTGAGCCGCACCAGCGCGCACCGCAAGGCTATGTTCCAGAACATG
GCGGTGTCGCTGTTCGAACACGAACTGATCAAAACCACCCTGCCCAAGGCCAAGGAACTGCGTCGCGTTGCC
GAGCCGCTGATCACCCTGGCCAAGGAAGACAGCGTCGCCAACCGTCGCCTGGCTTTCGACCGTACCCGTTCG
AAAGCTGCCGTTGGCAAGCTGTTCAACGACCTGGGCAAGCGCTACGCCAACCGTCCGGGCGGCTACCTGCGC
ATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCCCCCATGGCGTACGTCGAGCTGGTTGATCGTCCTGTC
GGCGGTGAAGTCGTAGAAGCTGCCGAATAA
Translation:
MRHRKSGRHLSRTSAHRKAMFQNMAVSLFEHELIKTTLPKAKELRRVAEPLITLAKEDSVANRRLAFDRTRS
KAAVGKLFNDLGKRYANRPGGYLRILKCGFRAGDNAPMAYVELVDRPVGGEVVEAAE*
AnnotationID:4816GeneID:4811
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 13:01:06
Gene Name:rplQ
Confidence Code:2
GeneProduct:50S ribosomal protein L17
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0203,pfam01196
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66110.1|AE016239_5 (AE016775) ribosomal protein L17 [Pseudomonas putida KT2440]
          Length = 128

 Score =  238 bits (607), Expect = 4e-63
 Identities = 122/129 (94%), Positives = 124/129 (96%), Gaps = 1/129 (0%)

>gb|AAO54194.1| (AE016858) ribosomal protein L17 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 128

 Score =  236 bits (602), Expect = 2e-62
 Identities = 121/129 (93%), Positives = 122/129 (94%), Gaps = 1/129 (0%)

>gb|AAM35880.1| (AE011729) 50S ribosomal protein L17 [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 127

 Score =  199 bits (505), Expect = 3e-51
 Identities = 101/125 (80%), Positives = 108/125 (86%)








 
Structural Features:
COG0203, RplQ, Ribosomal protein L17 
[Translation, ribosomal structure and biogenesis]
CD-Length = 116 residues, 100.0% aligned
Score =  176 bits (449), Expect = 5e-46
Identities = 82/116 (70%), Positives = 92/116 (79%)

pfam01196, Ribosomal_L17, Ribosomal protein L17
CD-Length = 103 residues, 100.0% aligned
Score =  120 bits (301), Expect = 8e-29
Identities = 55/103 (53%), Positives = 69/103 (66%), Gaps = 6/103 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9622




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26763




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36527




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4811_cdd.html


    		




 
URL:

















    ReferenceID:36699




  
Author/Investigator(s):
        Ma JF, Ochsner UA, Klotz MG, Nanayakkara VK, Howell ML, Johnson Z, Posey JE, Vasil ML, Monaco JJ, Hassett DJ.





  
Title:
        Bacterioferritin A modulates catalase A (KatA) activity and resistance to hydrogen peroxide in Pseudomonas aeruginosa.




  
PubMed:
        10368148


MedLine:
        




    
Source:
J Bacteriol. 1999 Jun;181(12):3730-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10368148

















    ReferenceID:36702




  
Author/Investigator(s):
        Meek DW, Hayward RS.





  
Title:
        Nucleotide sequence of the rpoA-rplQ DNA of Escherichia coli: a second regulatory binding site for protein S4?




  
PubMed:
        6379605


MedLine:
        




    
Source:
Nucleic Acids Res. 1984 Jul 25;12(14):5813-21.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6379605









           
Homologs By Global Alignment 

           

       



     
Gene ID:4811
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7187
                           PA4237_tr
                           translation of PA4237
                           129
                           99.99
                           99.99
                           0
                           654.0
     

     
     
188077
                           gb|AAG07625.1|AE004841_3
                           (AE004841) 50S ribosomal protein L17 [Pseudomonas aeruginosa PAO1]
                           129
                           99.99
                           99.99
                           0
                           654.0
     

     
     
188078
                           gb|AAC03117.1|
                           (AF047025) ribosomal large subunit protein L17 [Pseudomonas aeruginosa]
                           129
                           99.99
                           99.99
                           0
                           654.0
     

     
     
188079
                           gb|AAN66110.1|AE016239_5
                           (AE016775) ribosomal protein L17 [Pseudomonas putida KT2440]
                           129
                           94.57
                           96.12
                           1
                           609.0
     

     
     
188080
                           gb|AAO54194.1|
                           (AE016858) ribosomal protein L17 [Pseudomonas syringae pv. tomato str. DC3000]
                           129
                           93.79
                           94.57
                           1
                           604.0
     

     






      

          
GC ORFID: 47813How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4237Glimmer Score: 

          
Start: 4181498Stop: 4181109

          
Length: 390


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4237 translation of PA4237Homolog Bit Score 256.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5213 (ORF: BLASTX 237.0), t_PA4237 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCATCGTAAAAGTGGTCGTCACCTGAGCCGCACCAGCGCGCACCGCAAGGCTATGTTCCAGAACATG 
GCGGTGTCGCTGTTCGAACACGAACTGATCAAAACCACCCTGCCCAAGGCCAAGGAACTGCGTCGCGTTGCC 
GAGCCGCTGATCACCCTGGCCAAGGAAGACAGCGTCGCCAACCGTCGCCTGGCTTTCGACCGTACCCGTTCG 
AAAGCTGCCGTTGGCAAGCTGTTCAACGACCTGGGCAAGCGCTACGCCAACCGTCCGGGCGGCTACCTGCGC 
ATCCTGAAGTGCGGTTTCCGCGCTGGCGACAACGCCCCCATGGCGTACGTCGAGCTGGTTGATCGTCCTGTC 
GGCGGTGAAGTCGTAGAAGCTGCCGAATAA