ViewGene
Locus Name:
GeneID:
Location:

GeneID:4810
TrivialName: PA14_15090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15090
PAO1 Ortholog Locus:PA3788
Sequence Length:396
Protein Length:131
Start: 1280671
Stop: 1280276
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07175.1|AE004797_10 (AE004797) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/131 (99%), Positives = 130/131 (99%)
Sequence:
ATGACTCACCCGCTTCGCCTGCTCTGGCTGTGCTCGGCACTGTTCGTGGTCCTCGGCCTGGGCTTCGTCTTC
TTCCCCGGCCCGCTCGCCTCCCTGCTCACCAGCGGCGAACCGCTCACCCCCGCCGCCCTCACCGACCTGCGC
GCCAGCTACGGCGGCACCAGCTTCGGCATCGGCCTGCTGCTCGGCTATGCCGCCCTGCGCCCCCGCTACCTG
GTGCTCGGCCTGCTCGCCGCCCTGGCGGTGATCGCCAGCGGCGGCGCGGCGCGTCTCTACGGTGTGCTGATC
GACGCCTCGCCGGCGCTAACCACCTTCCTCTGGCTCGGCGCCGAGGCGCTGCTCTGCGTGCTGTTGCTGGCG
GCACTCTGGAAGACCCGCCAGCTCGACCTCGACTGA
Translation:
MTHPLRLLWLCSALFVVLGLGFVFFPGPLASLLTSGEPLTPAALTDLRASYGGTSFGIGLLLGYAALRPRYL
VLGLLAALAVIASGGAARLYGVLIDASPALTTFLWLGAEALLCVLLLAALWKTRQLDLD*
AnnotationID:4815GeneID:4810
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 18:06:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3788
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9620




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26761




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4810
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7186
                           PA3788_tr
                           translation of PA3788
                           131
                           99.23
                           99.23
                           0
                           655.0
     

     
     
188076
                           gb|AAG07175.1|AE004797_10
                           (AE004797) hypothetical protein PA3788 [Pseudomonas aeruginosa PAO1]
                           131
                           99.23
                           99.23
                           0
                           655.0
     

     






      

          
GC ORFID: 47812How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3788Glimmer Score: 

          
Start: 3673266Stop: 3673661

          
Length: 396


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3788 translation of PA3788Homolog Bit Score 256.0

          
Other Homologs:  t_PA3788 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTCACCCGCTTCGCCTGCTCTGGCTGTGCTCGGCACTGTTCGTGGTCCTCGGCCTGGGCTTCGTCTTC 
TTCCCCGGCCCGCTCGCCTCCCTGCTCACCAGCGGCGAACCGCTCACCCCCGCCGCCCTCACCGACCTGCGC 
GCCAGCTACGGCGGCACCAGCTTCGGCATCGGCCTGCTGCTCGGCTATGCCGCCCTGCGCCCCCGCTACCTG 
GTGCTCGGCCTGCTCGCCGCCCTGGCGGTGATCGCCAGCGGCGGCGCGGCGCGTCTCTACGGTGTGCTGATC 
GACGCCTCGCCGGCGCTAACCACCTTCCTCTGGCTCGGCGCCGAGGCGCTGCTCTGCGTGCTGTTGCTGGCG 
GCACTCTGGAAGACCCGCCAGCTCGACCTCGACTGA