ViewGene
Locus Name:
GeneID:
Location:

GeneID:481
TrivialName: PA14_68230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68230
PAO1 Ortholog Locus:PA5165
Sequence Length:1839
Protein Length:612
Start: 6085898
Stop: 6087736
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08550.1|AE004929_5 (AE004929) probable two-component sensor [Pseudomonas aeruginosa PAO1]
Identities = 610/612 (99%), Positives = 611/612 (99%)
Sequence:
ATGCCCCGGATACTCGCAGCCACGGCAGGTTCGTTCGTCTTGAAAGCCTATTTCCATCGCTGGCGCTCGCTG
GTCATCCTCGCCCTGCTTCTCGCGCCGCTGCTCTGGCCCCTGCAATATTTCGCCGAGCGCTACTACAGCGAG
CAGTTGGCCGAGCAGAACCGCCAGACGCTCGACCTCTACGTCGCCAATCTGCTCGGTACGCTGCGCCGCTAC
GAAGAACTGCCGCAGATCCTCGGCGGCCTGCCGGTGCTGCGCCAGGCCCTGCAACAACCTGGCGACCCGTTG
CTGCAGAAGATCGCCAACGAGGCGCTGGCCGACATCCGCCGACGCACCGGCGCCGACGTGATCTACCTGCTG
CAACCGGACGGCACCACCCAGGTCGCCTCCAACTGGGCCCAGGCGGACAGTTTCGTCCACCGCAACTTCGCC
TTCCGCCCCTATTATCGCGAGGCCATGCAGGGCCGCCTGGCGCGCTTCTTCGGCCTGGGCACCACCTCGATC
AAGCGCGGCTACTACTTCGCCAGTGCGGTGAAGGAAGGCTCGCGGATCATCGGCGTGCTGGTGGTGAAGGTC
GATCTCGAACACATCGAACGGCTCTGGGGCAATTCCCCGGAGCAACTGCTGGTGATAGACAACTACGGCGTG
GTGATCCTCTCCTCGCGCGAGGATTGGCGCTTCCATGCCAGTCGGCCGCTGAGCGCGGCGGAGCGCGACGAG
ATCCACGCCAACATCCCCTACCCGGTGCAGGACCCGAAGCCCCTGCGCCTGCAGCAGAGCGCCTGGCTCAGC
CAGAGCCGGACGCTACCGGAAACCGGCTGGACGGTGAGCATCTACGCCCCCCGCACACTCATCGAACGGCCG
GTGCGCAGCGTCCTGCTGATCGGCGGCGCGACCCTGCTCGCCCTGCTCCTGCTGCTTACCCTGCTGACCCTC
AGCCGCCGTCACTACCTGGACCGCATCGCTCTCGAGGCCGAGGCCAAGCGCCAGTTGGAAGAGCGCGTACTG
GAACGCACCCGCGAGCTGGAGAACGCCAACGCGCAGTTGCAGCAGGAAGTCCACGAACGCGAGCAGGCCCAG
CGCGAGCTGATGCGCGCCCAGGACGAAGTGGTCCAGGCCGGCAAGCTCACGGCCCTCGGCACCATGTCGGCG
AGCATCAGCCACGAACTCAACCAGCCGCTGGCGGCGATCCGCAGCTACGCCGACAACGCCCGGGTGCTGCTC
GACCACCAGCGCACCGAAGACGCCCGCGGCAATCTCGAGCAGATCAGCGACCTCACCACCCGCATGGCCTCG
ATCATCGCCCACCTCAAGGCCTATGCTCGCGGTGCGCGCCGGGCGCCGGAGAACGTGCAGCTGCAGCCGGCG
ATCGAGGACGCCCTGTCGATGCTCGCCAGTCGGCGGCGGGCGATGAACGTCGAACTGCTGCGCGACGTGCCG
GACGCCCCGCTGTGGGTCCAGGCCGGCGAGACCCGCTTGCGGCAGATCCTCGGCAACCTGCTCACCAATGCC
CTCGACGCGCTCGCCGAGAAAGCTCCGCCACGGCGCCTGTGGGTGATCGCCAGCCAGGACCAGCACGGCGTG
ATCCTGACCCTGCGCGACAACGGCCCGGGGTTTTCCGAGGACGCCCTGGCCCACGCCCACGAACCCTTCTTC
ACCACCAAGACCACCGCCAAAGGGCTCGGCCTCGGCCTGGCCATCTGCGATAACCTATTGCGCGCCCTCGGC
GGCCGCCTGGAAATGGGCAACCATCTCGAAGGCGGCGCCGTGGTGCGCCTGCACTTGCTGCCGGGAGTTCCC
GGCGTCGCCGCCATGCCCCAGGAGGAAACCCGCGCATGA
Translation:
MPRILAATAGSFVLKAYFHRWRSLVILALLLAPLLWPLQYFAERYYSEQLAEQNRQTLDLYVANLLGTLRRY
EELPQILGGLPVLRQALQQPGDPLLQKIANEALADIRRRTGADVIYLLQPDGTTQVASNWAQADSFVHRNFA
FRPYYREAMQGRLARFFGLGTTSIKRGYYFASAVKEGSRIIGVLVVKVDLEHIERLWGNSPEQLLVIDNYGV
VILSSREDWRFHASRPLSAAERDEIHANIPYPVQDPKPLRLQQSAWLSQSRTLPETGWTVSIYAPRTLIERP
VRSVLLIGGATLLALLLLLTLLTLSRRHYLDRIALEAEAKRQLEERVLERTRELENANAQLQQEVHEREQAQ
RELMRAQDEVVQAGKLTALGTMSASISHELNQPLAAIRSYADNARVLLDHQRTEDARGNLEQISDLTTRMAS
IIAHLKAYARGARRAPENVQLQPAIEDALSMLASRRRAMNVELLRDVPDAPLWVQAGETRLRQILGNLLTNA
LDALAEKAPPRRLWVIASQDQHGVILTLRDNGPGFSEDALAHAHEPFFTTKTTAKGLGLGLAICDNLLRALG
GRLEMGNHLEGGAVVRLHLLPGVPGVAAMPQEETRA*
AnnotationID:490GeneID:481
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 14:02:23
Gene Name:
Confidence Code:3
GeneProduct:probable two-component sensor
Cell Localization:(4) Inner membrane protein
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs: COG4191
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Two-component System
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:965




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18107




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:481
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
841
                           PA5165_tr
                           translation of PA5165
                           612
                           99.67
                           99.83
                           0
                           3086.0
     

     
     
34498
                           gb|AAG08550.1|AE004929_5
                           (AE004929) probable two-component sensor [Pseudomonas aeruginosa PAO1]
                           612
                           99.67
                           99.83
                           0
                           3086.0
     

     
     
34499
                           emb|CAC44169.1|
                           (AJ313422) C4 dicarboxylate transport sensor protein [Pseudomonas stutzeri]
                           612
                           65.19
                           78.10
                           11
                           1999.0
     

     
     
34500
                           gb|AAO58820.1|
                           (AE016875) sensor histidine kinase [Pseudomonas syringae pv. tomato str. DC3000]
                           617
                           63.69
                           75.85
                           20
                           1982.0
     

     
     
34501
                           gb|AAN65895.1|AE016217_7
                           (AE016775) sensor histidine kinase [Pseudomonas putida KT2440]
                           622
                           62.37
                           74.43
                           28
                           1923.0
     

     






      

          
GC ORFID: 43483How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5165Glimmer Score: 

          
Start: 5349584Stop: 5351422

          
Length: 1839


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5165 translation of PA5165Homolog Bit Score 1193.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2285 (ORF: BLASTX 770.0), t_PA5165 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGGATACTCGCAGCCACGGCAGGTTCGTTCGTCTTGAAAGCCTATTTCCATCGCTGGCGCTCGCTG 
GTCATCCTCGCCCTGCTTCTCGCGCCGCTGCTCTGGCCCCTGCAATATTTCGCCGAGCGCTACTACAGCGAG 
CAGTTGGCCGAGCAGAACCGCCAGACGCTCGACCTCTACGTCGCCAATCTGCTCGGTACGCTGCGCCGCTAC 
GAAGAACTGCCGCAGATCCTCGGCGGCCTGCCGGTGCTGCGCCAGGCCCTGCAACAACCTGGCGACCCGTTG 
CTGCAGAAGATCGCCAACGAGGCGCTGGCCGACATCCGCCGACGCACCGGCGCCGACGTGATCTACCTGCTG 
CAACCGGACGGCACCACCCAGGTCGCCTCCAACTGGGCCCAGGCGGACAGTTTCGTCCACCGCAACTTCGCC 
TTCCGCCCCTATTATCGCGAGGCCATGCAGGGCCGCCTGGCGCGCTTCTTCGGCCTGGGCACCACCTCGATC 
AAGCGCGGCTACTACTTCGCCAGTGCGGTGAAGGAAGGCTCGCGGATCATCGGCGTGCTGGTGGTGAAGGTC 
GATCTCGAACACATCGAACGGCTCTGGGGCAATTCCCCGGAGCAACTGCTGGTGATAGACAACTACGGCGTG 
GTGATCCTCTCCTCGCGCGAGGATTGGCGCTTCCATGCCAGTCGGCCGCTGAGCGCGGCGGAGCGCGACGAG 
ATCCACGCCAACATCCCCTACCCGGTGCAGGACCCGAAGCCCCTGCGCCTGCAGCAGAGCGCCTGGCTCAGC 
CAGAGCCGGACGCTACCGGAAACCGGCTGGACGGTGAGCATCTACGCCCCCCGCACACTCATCGAACGGCCG 
GTGCGCAGCGTCCTGCTGATCGGCGGCGCGACCCTGCTCGCCCTGCTCCTGCTGCTTACCCTGCTGACCCTC 
AGCCGCCGTCACTACCTGGACCGCATCGCTCTCGAGGCCGAGGCCAAGCGCCAGTTGGAAGAGCGCGTACTG 
GAACGCACCCGCGAGCTGGAGAACGCCAACGCGCAGTTGCAGCAGGAAGTCCACGAACGCGAGCAGGCCCAG 
CGCGAGCTGATGCGCGCCCAGGACGAAGTGGTCCAGGCCGGCAAGCTCACGGCCCTCGGCACCATGTCGGCG 
AGCATCAGCCACGAACTCAACCAGCCGCTGGCGGCGATCCGCAGCTACGCCGACAACGCCCGGGTGCTGCTC 
GACCACCAGCGCACCGAAGACGCCCGCGGCAATCTCGAGCAGATCAGCGACCTCACCACCCGCATGGCCTCG 
ATCATCGCCCACCTCAAGGCCTATGCTCGCGGTGCGCGCCGGGCGCCGGAGAACGTGCAGCTGCAGCCGGCG 
ATCGAGGACGCCCTGTCGATGCTCGCCAGTCGGCGGCGGGCGATGAACGTCGAACTGCTGCGCGACGTGCCG 
GACGCCCCGCTGTGGGTCCAGGCCGGCGAGACCCGCTTGCGGCAGATCCTCGGCAACCTGCTCACCAATGCC 
CTCGACGCGCTCGCCGAGAAAGCTCCGCCACGGCGCCTGTGGGTGATCGCCAGCCAGGACCAGCACGGCGTG 
ATCCTGACCCTGCGCGACAACGGCCCGGGGTTTTCCGAGGACGCCCTGGCCCACGCCCACGAACCCTTCTTC 
ACCACCAAGACCACCGCCAAAGGGCTCGGCCTCGGCCTGGCCATCTGCGATAACCTATTGCGCGCCCTCGGC 
GGCCGCCTGGAAATGGGCAACCATCTCGAAGGCGGCGCCGTGGTGCGCCTGCACTTGCTGCCGGGAGTTCCC 
GGCGTCGCCGCCATGCCCCAGGAGGAAACCCGCGCATGA