ViewGene
Locus Name:
GeneID:
Location:

GeneID:4809
TrivialName: PA14_24990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24990
PAO1 Ortholog Locus:PA3021
Sequence Length:387
Protein Length:128
Start: 2185408
Stop: 2185022
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06409.1|AE004727_5 (AE004727) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/128 (98%), Positives = 126/128 (98%)
Sequence:
ATGAACAAGCCCCTCGCTACCGCCCTGCTCGCCGCCTCCAGCCTGCTGCTCGCCGACGGCGCCCTGGCCGCC
GACGCCTGCGGTACGCCGCGCAACGCCTTCGACAGCGTGTATTGCCGCAGCGGCGAGTTTTCCCAGGCCGAC
CGCGAGCTGAACCAGCAGTTCGGCACCCTGCGCAAGCACCTGAACGACGGCCAGAAAGCCCTGCTGAAGAAG
AGCCAGATCGCCTGGATCAAGGAGCGCGACGCGGCCTGCAGCGAAAGCAAGGACAACGGTTATTTCGTCAAT
CTCGACTGCGCCACCGAGAAGACCCGCCAGCGCCTCGACTTCCTCCGCGAACGCGAGCGCGAGTGCCTGAGC
ACCGGTTGCGTCGACGCCAAGCTCTGA
Translation:
MNKPLATALLAASSLLLADGALAADACGTPRNAFDSVYCRSGEFSQADRELNQQFGTLRKHLNDGQKALLKK
SQIAWIKERDAACSESKDNGYFVNLDCATEKTRQRLDFLRERERECLSTGCVDAKL*
AnnotationID:4814GeneID:4809
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 19:07:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3021
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9618




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26759




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36023




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4809_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4809
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7185
                           PA3021_tr
                           translation of PA3021
                           128
                           98.43
                           98.43
                           0
                           653.0
     

     
     
188075
                           gb|AAG06409.1|AE004727_5
                           (AE004727) hypothetical protein PA3021 [Pseudomonas aeruginosa PAO1]
                           128
                           98.43
                           98.43
                           0
                           653.0
     

     






      

          
GC ORFID: 47811How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3021Glimmer Score: 

          
Start: 2768519Stop: 2768905

          
Length: 387


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3021 translation of PA3021Homolog Bit Score 256.0

          
Other Homologs:  t_PA3021 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGCCCCTCGCTACCGCCCTGCTCGCCGCCTCCAGCCTGCTGCTCGCCGACGGCGCCCTGGCCGCC 
GACGCCTGCGGTACGCCGCGCAACGCCTTCGACAGCGTGTATTGCCGCAGCGGCGAGTTTTCCCAGGCCGAC 
CGCGAGCTGAACCAGCAGTTCGGCACCCTGCGCAAGCACCTGAACGACGGCCAGAAAGCCCTGCTGAAGAAG 
AGCCAGATCGCCTGGATCAAGGAGCGCGACGCGGCCTGCAGCGAAAGCAAGGACAACGGTTATTTCGTCAAT 
CTCGACTGCGCCACCGAGAAGACCCGCCAGCGCCTCGACTTCCTCCGCGAACGCGAGCGCGAGTGCCTGAGC 
ACCGGTTGCGTCGACGCCAAGCTCTGA