ViewGene
Locus Name:
GeneID:
Location:

GeneID:4808
TrivialName: PA14_40690
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 00:12:22
LocusName:PA14_40690
PAO1 Ortholog Locus:PA1842
Sequence Length:363
Protein Length:120
Start: 3634803
Stop: 3635165
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05231.1|AE004610_4 (AE004610) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 120/120 (100%), Positives = 120/120 (100%)
Sequence:
ATGAAATTCCTCACTCCCGAGCAGATGGAAAAGCCGCGCAAGCGCCGCCTGCGCAAGAAACTGCGCCTGGGC
GAGTTCCAGGAGTTCGGCTTCAGCTTCGAACTGACCTACGACCGCAACGCTCTCTCCCACGACGATGCGCTG
GACCATCTGATCGACTTCGTCGAGGCCCAGGGCTGGGTGTTCGGCGGTGGCGGCTCGCCGGAACAGGCGGAG
ATCAGCGGCTACCTGTGCCTGGCGCGGGTCGGCAGCCTAGACGAGGCGGACCGGGAAAGCGCCCGCCTGTGG
CTGGAAGCCCAACCCTGGTGCAAGACCTTCGAGGTCGGCCCGTTGAGCGACTGCTGGCACAACTTCTTCGAG
TGA
Translation:
MKFLTPEQMEKPRKRRLRKKLRLGEFQEFGFSFELTYDRNALSHDDALDHLIDFVEAQGWVFGGGGSPEQAE
ISGYLCLARVGSLDEADRESARLWLEAQPWCKTFEVGPLSDCWHNFFE*
AnnotationID:4813GeneID:4808
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1842
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9616




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26757




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37056




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4808_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4808
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7184
                           PA1842_tr
                           translation of PA1842
                           120
                           99.99
                           99.99
                           0
                           654.0
     

     
     
188074
                           gb|AAG05231.1|AE004610_4
                           (AE004610) hypothetical protein PA1842 [Pseudomonas aeruginosa PAO1]
                           120
                           99.99
                           99.99
                           0
                           654.0
     

     






      

          
GC ORFID: 47810How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1842Glimmer Score: 

          
Start: 1319107Stop: 1318745

          
Length: 363


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1842 translation of PA1842Homolog Bit Score 256.0

          
Other Homologs:  t_PA1842 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAATTCCTCACTCCCGAGCAGATGGAAAAGCCGCGCAAGCGCCGCCTGCGCAAGAAACTGCGCCTGGGC 
GAGTTCCAGGAGTTCGGCTTCAGCTTCGAACTGACCTACGACCGCAACGCTCTCTCCCACGACGATGCGCTG 
GACCATCTGATCGACTTCGTCGAGGCCCAGGGCTGGGTGTTCGGCGGTGGCGGCTCGCCGGAACAGGCGGAG 
ATCAGCGGCTACCTGTGCCTGGCGCGGGTCGGCAGCCTAGACGAGGCGGACCGGGAAAGCGCCCGCCTGTGG 
CTGGAAGCCCAACCCTGGTGCAAGACCTTCGAGGTCGGCCCGTTGAGCGACTGCTGGCACAACTTCTTCGAG 
TGA