ViewGene
Locus Name:
GeneID:
Location:

GeneID:4807
TrivialName: PA14_45480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45480
PAO1 Ortholog Locus:PA1465
Sequence Length:408
Protein Length:135
Start: 4049617
Stop: 4049210
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04854.1|AE004576_3 (AE004576) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 135/135 (100%), Positives = 135/135 (100%)
Sequence:
ATGGAGGTCGTCGCGCTGGCACTGGCGCTCGCCGCCTGCCTCGGCCTGGCGGCGGCGTGCCTGTGGCTGCGC
CGTGAATTGCGCCGCCTGCAAGCTGCGCTAGCGCAGCAGGCGGAGGAGGGCGCGGCGCGCGAGCGCCGGCTC
AAGGAACTGAGCAAGCGCATCGAGTCCTACCAGCAGGTCAACGTGCGCATGGGCGAGGCCTTGCAGGACCTG
GGCAAGCAACTCGCGCCGCTTCCCGACCGGGTCGCGCGCCTGGAGCAGCGCGATCCGACCACGCTGTCGTTC
AGCCAGGCCGCACGCCTGGTCGGGCTCGGCGCCAGCGCCGAAGACCTGACCCAGGCCTGCGGGCTGTCGCAG
GCCGAGGCCGAGCTGGTGGCGCGCCTGCACGAAGCCAAGGGCAAGTGA
Translation:
MEVVALALALAACLGLAAACLWLRRELRRLQAALAQQAEEGAARERRLKELSKRIESYQQVNVRMGEALQDL
GKQLAPLPDRVARLEQRDPTTLSFSQAARLVGLGASAEDLTQACGLSQAEAELVARLHEAKGK*
AnnotationID:4812GeneID:4807
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 13:01:58
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1465
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9614




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26755




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37376




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4807_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4807
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7183
                           PA1465_tr
                           translation of PA1465
                           135
                           99.99
                           99.99
                           0
                           654.0
     

     
     
188071
                           gb|AAG04854.1|AE004576_3
                           (AE004576) hypothetical protein PA1465 [Pseudomonas aeruginosa PAO1]
                           135
                           99.99
                           99.99
                           0
                           654.0
     

     
     
188072
                           gb|AAN69910.1|AE016630_1
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           138
                           49.27
                           69.56
                           10
                           323.0
     

     
     
188073
                           gb|AAO55507.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           138
                           44.92
                           65.21
                           22
                           295.0
     

     






      

          
GC ORFID: 47809How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1465Glimmer Score: 

          
Start: 904292Stop: 904699

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1465 translation of PA1465Homolog Bit Score 256.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7949 (ORF: BLASTX 122.0), t_PA1465 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGGTCGTCGCGCTGGCACTGGCGCTCGCCGCCTGCCTCGGCCTGGCGGCGGCGTGCCTGTGGCTGCGC 
CGTGAATTGCGCCGCCTGCAAGCTGCGCTAGCGCAGCAGGCGGAGGAGGGCGCGGCGCGCGAGCGCCGGCTC 
AAGGAACTGAGCAAGCGCATCGAGTCCTACCAGCAGGTCAACGTGCGCATGGGCGAGGCCTTGCAGGACCTG 
GGCAAGCAACTCGCGCCGCTTCCCGACCGGGTCGCGCGCCTGGAGCAGCGCGATCCGACCACGCTGTCGTTC 
AGCCAGGCCGCACGCCTGGTCGGGCTCGGCGCCAGCGCCGAAGACCTGACCCAGGCCTGCGGGCTGTCGCAG 
GCCGAGGCCGAGCTGGTGGCGCGCCTGCACGAAGCCAAGGGCAAGTGA