ViewGene
Locus Name:
GeneID:
Location:

GeneID:4806
TrivialName: PA14_59500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59500
PAO1 Ortholog Locus:
Sequence Length:363
Protein Length:120
Start: 5294150
Stop: 5294512
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84192.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 120/120 (100%), Positives = 120/120 (100%)
Sequence:
ATGGGATGGCTTTTCTCACATCAGACGAAGGAAGACCTGCTGCGTGAGCTGCTGGCCCCAACCAGTACCTTC
GCAGGCAGCACCGAGGTGCTGGCACACGCAGTCTCCGGCAATGAACTTTGGACTGTCGTAAAACGAACTTTT
CACCTTGCCGGATTCTATTTCGGCAAGCCGGCCGGTCACTCGATCACCATGATCGAGCTGCACTTGCTGGAC
TGCTCGGCCGGGCAATGGGGCTACAAGACCATTCCGGAAAGCGCCGGCCCGTTCTACTACGGCTGTCCGCTG
GAGTTCCTGGACCTGGCTCACGATGAGATCAACCAGGAATGGCGTAAACGCCTGACGCACGAACACCAAGCC
TGA
Translation:
MGWLFSHQTKEDLLRELLAPTSTFAGSTEVLAHAVSGNELWTVVKRTFHLAGFYFGKPAGHSITMIELHLLD
CSAGQWGYKTIPESAGPFYYGCPLEFLDLAHDEINQEWRKRLTHEHQA*
AnnotationID:4811GeneID:4806
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 10:10:31
Gene Name:
Confidence Code:4
GeneProduct:conserved Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold






   
Genomic Context:






   
Comment:


















    ReferenceID:9612




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26753




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4806
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
188067
                           gb|AAP84192.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           120
                           99.99
                           99.99
                           0
                           657.0
     

     
     
188068
                           gb|AAN62171.1|AF440523_78
                           (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa]
                           136
                           36.76
                           54.41
                           17
                           264.0
     

     
     
188069
                           emb|CAE92933.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           136
                           36.76
                           52.20
                           17
                           260.0
     

     
     
188070
                           gb|AAF84567.1|AE003998_9
                           (AE003998) hypothetical protein [Xylella fastidiosa 9a5c]
                           136
                           36.76
                           52.94
                           17
                           259.0
     

     






      

          
GC ORFID: 47808How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL067Glimmer Score: 

          
Start: 4557829Stop: 4558191

          
Length: 363


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL067 120 Homolog: XF1758 / Hypothetical protein / X.fastidiosa / 9a5c (AAF84567) translation of RL067Homolog Bit Score 257.0

          
Other Homologs:  t_RL067 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGATGGCTTTTCTCACATCAGACGAAGGAAGACCTGCTGCGTGAGCTGCTGGCCCCAACCAGTACCTTC 
GCAGGCAGCACCGAGGTGCTGGCACACGCAGTCTCCGGCAATGAACTTTGGACTGTCGTAAAACGAACTTTT 
CACCTTGCCGGATTCTATTTCGGCAAGCCGGCCGGTCACTCGATCACCATGATCGAGCTGCACTTGCTGGAC 
TGCTCGGCCGGGCAATGGGGCTACAAGACCATTCCGGAAAGCGCCGGCCCGTTCTACTACGGCTGTCCGCTG 
GAGTTCCTGGACCTGGCTCACGATGAGATCAACCAGGAATGGCGTAAACGCCTGACGCACGAACACCAAGCC 
TGA