ViewGene
Locus Name:
GeneID:
Location:

GeneID:4804
TrivialName: PA14_57080
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57080
PAO1 Ortholog Locus:PA4392
Sequence Length:384
Protein Length:127
Start: 5085536
Stop: 5085919
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07780.1|AE004855_2 (AE004855) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 126/127 (99%), Positives = 126/127 (99%)
Sequence:
ATGGGCGTTCACAAGGCGGACAGGAAAGGGAAAACCGTTGAGCATGCCTGGGCTGGCAGCGACCCGGCAAGT
GCCCAGGCGCGCCGCGAGGCCCTGTACCTGGTGCTGGCGCAGGTGCCGCCGGGGCAGGTGGTCAGCTACGGG
CAACTGGCCGAATTGGCCGGCCTAGGCCGCGCCGCCCGCTGGGTCGGCAGGACGCTCAGCCAGTTGCCGGTG
GATACCCGCCTGCCCTGGCATCGGGTTCTCGGCGCCGGCGGTCGCATCAGCCTGCCGGCGGACAGTCCCGGC
GGTCGCGAACAGCGCGCACGCTTGCGCGAGGAAGGCGTTCTCCTGCACAACGACAGGGTGGACATACGTCGG
CATGGCTGGCTTACAGCGAAGTAG
Translation:
MGVHKADRKGKTVEHAWAGSDPASAQARREALYLVLAQVPPGQVVSYGQLAELAGLGRAARWVGRTLSQLPV
DTRLPWHRVLGAGGRISLPADSPGGREQRARLREEGVLLHNDRVDIRRHGWLTAK*
AnnotationID:4809GeneID:4804
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 12:12:11
Gene Name:
Confidence Code:3
GeneProduct:putative methyltransferase
Cell Localization:()
Synonyms:PA4392
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3695
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57832.1| (AE016871) MGMT family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 148

 Score =  152 bits (384), Expect = 3e-37
 Identities = 72/103 (69%), Positives = 86/103 (83%)

>gb|AAM37594.1| (AE011915) methylated-DNA-protein-cysteine S-methyltransferase
           related protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 135

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 46/101 (45%), Positives = 59/101 (58%), Gaps = 3/101 (2%)






 
Structural Features:
COG3695, Predicted methylated DNA-protein cysteine methyltransferase 
[DNA replication, recombination, and repair]
CD-Length = 103 residues, 100.0% aligned
Score =  115 bits (289), Expect = 3e-27
Identities = 47/105 (44%), Positives = 62/105 (59%), Gaps = 3/105 (2%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9608




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20060




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4804_cdd.html


    		




 
URL:

















    ReferenceID:26749




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4804
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7181
                           PA4392_tr
                           translation of PA4392
                           127
                           99.21
                           99.21
                           0
                           657.0
     

     
     
188061
                           gb|AAG07780.1|AE004855_2
                           (AE004855) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           127
                           99.21
                           99.21
                           0
                           657.0
     

     
     
188062
                           gb|AAD21099.1|
                           (AF082985) unknown [Pseudomonas aeruginosa]
                           127
                           99.21
                           99.21
                           0
                           657.0
     

     
     
188063
                           gb|AAN66979.1|AE016326_5
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           130
                           62.30
                           68.46
                           16
                           400.0
     

     
     
188064
                           gb|AAO57832.1|
                           (AE016871) MGMT family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           155
                           49.67
                           59.35
                           35
                           371.0
     

     






      

          
GC ORFID: 47806How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4392Glimmer Score: 

          
Start: 4349212Stop: 4349595

          
Length: 384


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4392 translation of PA4392Homolog Bit Score 257.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1989 (ORF: BLASTX 153.0), t_PA4392 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGTTCACAAGGCGGACAGGAAAGGGAAAACCGTTGAGCATGCCTGGGCTGGCAGCGACCCGGCAAGT 
GCCCAGGCGCGCCGCGAGGCCCTGTACCTGGTGCTGGCGCAGGTGCCGCCGGGGCAGGTGGTCAGCTACGGG 
CAACTGGCCGAATTGGCCGGCCTAGGCCGCGCCGCCCGCTGGGTCGGCAGGACGCTCAGCCAGTTGCCGGTG 
GATACCCGCCTGCCCTGGCATCGGGTTCTCGGCGCCGGCGGTCGCATCAGCCTGCCGGCGGACAGTCCCGGC 
GGTCGCGAACAGCGCGCACGCTTGCGCGAGGAAGGCGTTCTCCTGCACAACGACAGGGTGGACATACGTCGG 
CATGGCTGGCTTACAGCGAAGTAG