ViewGene
Locus Name:
GeneID:
Location:

GeneID:4801
TrivialName: PA14_25100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25100
PAO1 Ortholog Locus:PA3012
Sequence Length:375
Protein Length:124
Start: 2196186
Stop: 2196560
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06400.1|AE004726_6 (AE004726) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 124/124 (100%), Positives = 124/124 (100%)
Sequence:
ATGACGCCCCGGGAGCGCGGGTTTGCCTATTGTGCGATCCGTGCCTATACCGGGCTGTTGTATGTCGGCATT
GTGCCGTTGTTTTCCGATTTTCGAGACAAGGTAAGGAACATGGACCTGCAGGCTGGGCTCTATCGTCATTAC
AAGGGACAGAACTACCGGGTCCTGGGTGTCGCGCGGCATTCGGAGACGGAAGAGGCGCTGGTGATCTACCAG
GCGCTGTACGGCGAATTCGGTCTCTGGGTGCGTCCGCTGGAGATGTTCACCGAGGCCGTGGAGGTCGATGGC
GAGTGGGTGCCGCGCTTCGTCCTGGTGAGTCCCGAGGCCGATCCCCTGGGCTTGCAGAAAGCTCCCGGCGGG
GAAGACCGCGCTTGA
Translation:
MTPRERGFAYCAIRAYTGLLYVGIVPLFSDFRDKVRNMDLQAGLYRHYKGQNYRVLGVARHSETEEALVIYQ
ALYGEFGLWVRPLEMFTEAVEVDGEWVPRFVLVSPEADPLGLQKAPGGEDRA*
AnnotationID:4806GeneID:4801
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 18:06:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3012
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9602




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26743




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36027




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4801_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4801
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7178
                           PA3012_tr
                           translation of PA3012
                           124
                           99.99
                           99.99
                           0
                           656.0
     

     
     
187987
                           gb|AAG06400.1|AE004726_6
                           (AE004726) hypothetical protein PA3012 [Pseudomonas aeruginosa PAO1]
                           124
                           99.99
                           99.99
                           0
                           656.0
     

     
     
187988
                           gb|AAO56990.1|
                           (AE016868) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           124
                           45.16
                           52.41
                           37
                           283.0
     

     
     
187989
                           gb|AAN67751.1|AE016406_6
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           126
                           42.06
                           47.61
                           45
                           257.0
     

     






      

          
GC ORFID: 47803How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3012Glimmer Score: 

          
Start: 2757741Stop: 2757367

          
Length: 375


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3012 translation of PA3012Homolog Bit Score 257.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8046 (ORF: BLASTX 117.0), t_PA3012 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCCCCGGGAGCGCGGGTTTGCCTATTGTGCGATCCGTGCCTATACCGGGCTGTTGTATGTCGGCATT 
GTGCCGTTGTTTTCCGATTTTCGAGACAAGGTAAGGAACATGGACCTGCAGGCTGGGCTCTATCGTCATTAC 
AAGGGACAGAACTACCGGGTCCTGGGTGTCGCGCGGCATTCGGAGACGGAAGAGGCGCTGGTGATCTACCAG 
GCGCTGTACGGCGAATTCGGTCTCTGGGTGCGTCCGCTGGAGATGTTCACCGAGGCCGTGGAGGTCGATGGC 
GAGTGGGTGCCGCGCTTCGTCCTGGTGAGTCCCGAGGCCGATCCCCTGGGCTTGCAGAAAGCTCCCGGCGGG 
GAAGACCGCGCTTGA