ViewGene

Locus Name:
GeneID:
Location:

GeneID: 480

TrivialName: PA14_34010

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_34010

PAO1 Ortholog Locus: PA2369

Sequence Length: 1794

Protein Length: 597

Start: 3026664

Stop: 3024871

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05757.1|AE004663_3 (AE004663) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 596/597 (99%), Positives = 596/597 (99%)

Sequence:

ATGAGCGATTCGATTGATGCCGACCTGCTCGACTACTACCAGCGCGAGCTGACCTGGCTACGGCACGCCGGC
GGCGCCTTCGCCGAGCGCTATCCGAAGGTCGCCCGGCGCCTGCAACTGGCCCCCGGCGAATGCCCCGACCCG
CACGTCGAGCGTCTGCTGGAAGGTTTCTCGCTGCTCACCGCGCGCCTGCAACGGCGCCTCGACGACGACTAC
GCAGAGTTCAGCGACGCCCTCCTCGAACAGCTCTACCCCCTGGCGCTGCGCCCGCTGCCGTCCTGCGCGATC
GTCCAGTTCGAACCGGACCCGACCCAGGGCAACCTCGCCGAGGGCTACCGGCTGCCGCGCGACACCGCGCTG
TTCGTCACCACCCGTGGCGGCGACAGCGTGCATTTCCGCAGCAGCGCCGAGGCGACCCTGTGGCCGCTGGCG
ATCGACGAGGCGACCCTGCTCGGCGGCGAGGAGGCACAAGCCCTGACCGGAGTCGGCGCCGCCCGCTCGGCG
TTGCGCCTGAGCCTGCGCTGCCTGGGCGAGTACCGCTGGGACGAACTGTCGATCGAGCGCCTGCGCATCCAC
CTGGCGGCTTCGCCGATGGGCTGCGCGATCCTCTACGACCTGCTCGCCGCGCATGCCGTGCAGGTCATGGCG
GGGGCGCCCGGCACGCCGCCGGCGGCGCTCCGCGGACTGCCGGAGATCGTCGGCTTCGCCGCCGACGAGGCG
CTGCTGCCGGAGGAAGACGGCGGACATCCGGGCCTGCGCCTGCTCGCCGAGTACTTCGCCTTCCCCGACAAG
TTCCACTTCTTCGACCTGCCGCTGTCCGGCGCGCTCGCCGACGGACAGACGCTCTACCTGTACCTGGTCTTC
GATCGCGCACCGACGGCACGCCTGCATTTGCAGGCGGAAGACTTCCAGCTCGGCTGCGCGCCGGCGATCAAC
CTCTTTCCGCGGACCTCGGAGCCGCTGCGCCCGGACGGCACCCGCAGCGAGTACCGCCTGGTCGCCGACAGT
CACCGCGAGAACAGCGTGGAAATCCATAGCATCCGCGCCGTGCGCTCGGTTGCCGGGAGCACCGTGCAGCCA
GTCCCGGCCTACTATGGCTGCCGCCACGACAGCCACCTCGGCACGCTCTACTGGCACGCCCGGCGCATCGCC
GGGCTGACCCCGAACCGGCTGGGCAGCGACCTGCTGCTGAGCCTGGTGGATACCGGCTTCGACCCGTTGCGC
GAGGCCCCGGCCTTCAGCCTGACCGCCGAGCTGCTATGCACCAATCGCTATCTGGCCGAGCGCCTGGGTGCC
GGCACCGCGCTGGGCTTCGAACGGCCCGGGCCGGTCGCCGCCGCACGCCTGCGCAACGCGCCCAGCGCGCAG
AGCCAGCCGCGCCTGGACGGCCAGTCGCGCTGGAGACTGGTCTCGCAGCTGACCCTCAACCACCTCTCGCTG
GTGGAAGGTCCGCGCGCCCTCGAAGCCCTGCGGGAAATCCTCGCCCTGCACAACCTGCGCGACGACGCCAGC
GCCCGCCGGCAGATAGAAGGGCTGCGGCAACTCGACTGCCAGCGGGTGGTGGCGCACGTCGGCGAGGATGCC
TGGCGCGGCTGGCGCAATGGCCTGGAAATCCGCCTGCGACTCGATCCGCAACACTTCGTCGGCGCCAGCGGC
GTGCTGTTCTCCGCCGTGCTGGCGCAGTTCTTCTCGCTGTATGCCACCGCCAACCGCTTCGTGCGCACGGTC
CTGGTGGAAGCCGACAAGGAGGTGAAGACATGGCAACCCCAGGCCGGCTCGCCGCTCTCCCTCTGA

Translation:

MSDSIDADLLDYYQRELTWLRHAGGAFAERYPKVARRLQLAPGECPDPHVERLLEGFSLLTARLQRRLDDDY
AEFSDALLEQLYPLALRPLPSCAIVQFEPDPTQGNLAEGYRLPRDTALFVTTRGGDSVHFRSSAEATLWPLA
IDEATLLGGEEAQALTGVGAARSALRLSLRCLGEYRWDELSIERLRIHLAASPMGCAILYDLLAAHAVQVMA
GAPGTPPAALRGLPEIVGFAADEALLPEEDGGHPGLRLLAEYFAFPDKFHFFDLPLSGALADGQTLYLYLVF
DRAPTARLHLQAEDFQLGCAPAINLFPRTSEPLRPDGTRSEYRLVADSHRENSVEIHSIRAVRSVAGSTVQP
VPAYYGCRHDSHLGTLYWHARRIAGLTPNRLGSDLLLSLVDTGFDPLREAPAFSLTAELLCTNRYLAERLGA
GTALGFERPGPVAAARLRNAPSAQSQPRLDGQSRWRLVSQLTLNHLSLVEGPRALEALREILALHNLRDDAS
ARRQIEGLRQLDCQRVVAHVGEDAWRGWRNGLEIRLRLDPQHFVGASGVLFSAVLAQFFSLYATANRFVRTV
LVEADKEVKTWQPQAGSPLSL*

AnnotationID:489 GeneID:480

AnnotatorUID: diggins

Modification Date/Time: 2005-03-04 16:04:47

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA2369

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:963

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18105

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:32915

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 480_cdd.html

URL:

Homologs By Global Alignment

Gene ID:480

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

840 PA2369_tr translation of PA2369 597 99.83 99.83 0 3087.0

34497 gb|AAG05757.1|AE004663_3 (AE004663) hypothetical protein PA2369 [Pseudomonas aeruginosa PAO1] 597 99.83 99.83 0 3087.0

GC ORFID: `43482`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2369`	Glimmer Score:
Start: `1927252`	Stop: `1929045`
Length: `1794`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA2369 translation of PA2369`	Homolog Bit Score `1193.0`
Other Homologs: `t_PA2369 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCGATTCGATTGATGCCGACCTGCTCGACTACTACCAGCGCGAGCTGACCTGGCTACGGCACGCCGGC GGCGCCTTCGCCGAGCGCTATCCGAAGGTCGCCCGGCGCCTGCAACTGGCCCCCGGCGAATGCCCCGACCCG CACGTCGAGCGTCTGCTGGAAGGTTTCTCGCTGCTCACCGCGCGCCTGCAACGGCGCCTCGACGACGACTAC GCAGAGTTCAGCGACGCCCTCCTCGAACAGCTCTACCCCCTGGCGCTGCGCCCGCTGCCGTCCTGCGCGATC GTCCAGTTCGAACCGGACCCGACCCAGGGCAACCTCGCCGAGGGCTACCGGCTGCCGCGCGACACCGCGCTG TTCGTCACCACCCGTGGCGGCGACAGCGTGCATTTCCGCAGCAGCGCCGAGGCGACCCTGTGGCCGCTGGCG ATCGACGAGGCGACCCTGCTCGGCGGCGAGGAGGCACAAGCCCTGACCGGAGTCGGCGCCGCCCGCTCGGCG TTGCGCCTGAGCCTGCGCTGCCTGGGCGAGTACCGCTGGGACGAACTGTCGATCGAGCGCCTGCGCATCCAC CTGGCGGCTTCGCCGATGGGCTGCGCGATCCTCTACGACCTGCTCGCCGCGCATGCCGTGCAGGTCATGGCG GGGGCGCCCGGCACGCCGCCGGCGGCGCTCCGCGGACTGCCGGAGATCGTCGGCTTCGCCGCCGACGAGGCG CTGCTGCCGGAGGAAGACGGCGGACATCCGGGCCTGCGCCTGCTCGCCGAGTACTTCGCCTTCCCCGACAAG TTCCACTTCTTCGACCTGCCGCTGTCCGGCGCGCTCGCCGACGGACAGACGCTCTACCTGTACCTGGTCTTC GATCGCGCACCGACGGCACGCCTGCATTTGCAGGCGGAAGACTTCCAGCTCGGCTGCGCGCCGGCGATCAAC CTCTTTCCGCGGACCTCGGAGCCGCTGCGCCCGGACGGCACCCGCAGCGAGTACCGCCTGGTCGCCGACAGT CACCGCGAGAACAGCGTGGAAATCCATAGCATCCGCGCCGTGCGCTCGGTTGCCGGGAGCACCGTGCAGCCA GTCCCGGCCTACTATGGCTGCCGCCACGACAGCCACCTCGGCACGCTCTACTGGCACGCCCGGCGCATCGCC GGGCTGACCCCGAACCGGCTGGGCAGCGACCTGCTGCTGAGCCTGGTGGATACCGGCTTCGACCCGTTGCGC GAGGCCCCGGCCTTCAGCCTGACCGCCGAGCTGCTATGCACCAATCGCTATCTGGCCGAGCGCCTGGGTGCC GGCACCGCGCTGGGCTTCGAACGGCCCGGGCCGGTCGCCGCCGCACGCCTGCGCAACGCGCCCAGCGCGCAG AGCCAGCCGCGCCTGGACGGCCAGTCGCGCTGGAGACTGGTCTCGCAGCTGACCCTCAACCACCTCTCGCTG GTGGAAGGTCCGCGCGCCCTCGAAGCCCTGCGGGAAATCCTCGCCCTGCACAACCTGCGCGACGACGCCAGC GCCCGCCGGCAGATAGAAGGGCTGCGGCAACTCGACTGCCAGCGGGTGGTGGCGCACGTCGGCGAGGATGCC TGGCGCGGCTGGCGCAATGGCCTGGAAATCCGCCTGCGACTCGATCCGCAACACTTCGTCGGCGCCAGCGGC GTGCTGTTCTCCGCCGTGCTGGCGCAGTTCTTCTCGCTGTATGCCACCGCCAACCGCTTCGTGCGCACGGTC CTGGTGGAAGCCGACAAGGAGGTGAAGACATGGCAACCCCAGGCCGGCTCGCCGCTCTCCCTCTGA