ViewGene
Locus Name:
GeneID:
Location:

GeneID:4799
TrivialName: PA14_07020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07020
PAO1 Ortholog Locus:PA0540
Sequence Length:387
Protein Length:128
Start: 608582
Stop: 608968
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03929.1|AE004490_9 (AE004490) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 128/128 (100%), Positives = 128/128 (100%)
Sequence:
ATGACCATCGCTTTCTGGTGCGTGCTGATCGCGATCTTCCTGCCTTACGTCTGTACCTCCATCGCCAAGTTC
GGCGGGGAGGGCTACGGCGGTCGGGCCAACGCCGACCCGCGGGCGTTCCTCGGTTCGCTCGAAGGCTTCCGC
CGGCGTGCCAACAACGCCCAGTTGAACGCCTTCGAGGTGACCCCGGCGTTCGCCGCGGCGGTGATCATCGCC
CATCTGGTCGGCAACGCTTCGCAGGCGACCCTGGATAGCCTGGCCATTGCCTGGATCACCAGTCGCCTGCTC
TACGTCATCTGCTACCTCGCCGACTGGGGGCCGTTGCGCTCGCTGGTCTGGTTCGTCGGCATGCTGCTCATC
GCCGCGTTCTTCGTGGTTTCCGCCTGA
Translation:
MTIAFWCVLIAIFLPYVCTSIAKFGGEGYGGRANADPRAFLGSLEGFRRRANNAQLNAFEVTPAFAAAVIIA
HLVGNASQATLDSLAIAWITSRLLYVICYLADWGPLRSLVWFVGMLLIAAFFVVSA*
AnnotationID:4804GeneID:4799
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:03
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA0540
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3686
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD14490.1| (AL646061) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
          Length = 127

 Score =  122 bits (305), Expect = 5e-28
 Identities = 65/128 (50%), Positives = 81/128 (63%), Gaps = 4/128 (3%)






 
Structural Features:
COG3686, Predicted membrane protein
CD-Length = 125 residues,  99.2% aligned
Score =  132 bits (334), Expect = 1e-32
Identities = 75/128 (58%), Positives = 87/128 (67%), Gaps = 4/128 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9598




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26739




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33839




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4799_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4799
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7176
                           PA0540_tr
                           translation of PA0540
                           128
                           99.99
                           99.99
                           0
                           659.0
     

     
     
187980
                           gb|AAG03929.1|AE004490_9
                           (AE004490) hypothetical protein PA0540 [Pseudomonas aeruginosa PAO1]
                           128
                           99.99
                           99.99
                           0
                           659.0
     

     
     
187981
                           gb|AAO53924.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           133
                           63.90
                           72.93
                           5
                           426.0
     

     
     
187982
                           gb|AAN70539.1|AE016696_4
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           128
                           57.81
                           71.09
                           0
                           383.0
     

     
     
187983
                           emb|CAD14490.1|
                           (AL646061) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           131
                           49.61
                           61.83
                           7
                           310.0
     

     






      

          
GC ORFID: 47801How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0540Glimmer Score: 

          
Start: 6409924Stop: 6410310

          
Length: 387


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0540 translation of PA0540Homolog Bit Score 258.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6560 (ORF: BLASTX 171.0), t_PA0540 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCATCGCTTTCTGGTGCGTGCTGATCGCGATCTTCCTGCCTTACGTCTGTACCTCCATCGCCAAGTTC 
GGCGGGGAGGGCTACGGCGGTCGGGCCAACGCCGACCCGCGGGCGTTCCTCGGTTCGCTCGAAGGCTTCCGC 
CGGCGTGCCAACAACGCCCAGTTGAACGCCTTCGAGGTGACCCCGGCGTTCGCCGCGGCGGTGATCATCGCC 
CATCTGGTCGGCAACGCTTCGCAGGCGACCCTGGATAGCCTGGCCATTGCCTGGATCACCAGTCGCCTGCTC 
TACGTCATCTGCTACCTCGCCGACTGGGGGCCGTTGCGCTCGCTGGTCTGGTTCGTCGGCATGCTGCTCATC 
GCCGCGTTCTTCGTGGTTTCCGCCTGA