ViewGene
Locus Name:
GeneID:
Location:

GeneID:4798
TrivialName: PA14_68630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68630
PAO1 Ortholog Locus:PA5195
Sequence Length:396
Protein Length:131
Start: 6120577
Stop: 6120182
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08580.1|AE004932_7 (AE004932) probable heat shock protein [Pseudomonas aeruginosa PAO1]
Identities = 129/131 (98%), Positives = 130/131 (99%)
Sequence:
GTGAGCGAGAAAGACGACGACAAGGTGCGCCTGGACAAGTGGCTCTGGGCGGCGCGCTTCTTCAAGACCCGG
GCGCTGGCCAAGGCCGCGATAGAGGGCGGCAAGGTGCATTGCCGGGGCGAGCGGTGCAAGCCGAGCAAGGAA
CCCAGGGTAGGGGAGGAATTGACCATTCGTACGGGCTTCGACGAGCGAACCGTGACGATTCGCGCGCTTTCC
GTAGTCCGGCGTGGCGCGCCGGAGGCCCAGGCTCTCTACGAGGAAACCGCGGACAGCGTGGAAAGCCGCGAG
CGCGCGGCGGCCATGCGCAAGGCCGGGGCGCTGGGCGTACAGACCGAGGGGCGGCCGAGCAAGAAGCAGCGG
CGGCAGATCCACCAGTTGCGCGGCGGCCAGGACTGA
Translation:
MSEKDDDKVRLDKWLWAARFFKTRALAKAAIEGGKVHCRGERCKPSKEPRVGEELTIRTGFDERTVTIRALS
VVRRGAPEAQALYEETADSVESRERAAAMRKAGALGVQTEGRPSKKQRRQIHQLRGGQD*
AnnotationID:4803GeneID:4798
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:14
Gene Name:
Confidence Code:3
GeneProduct:putative ribosome-associated heat shock protein
Cell Localization:()
Synonyms:hslR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1188
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65882.1|AE016216_3 (AE016775) heat shock protein 15 [Pseudomonas putida KT2440]
          Length = 133

 Score =  219 bits (557), Expect = 3e-57
 Identities = 104/128 (81%), Positives = 115/128 (89%)

>gb|AAO53783.1| (AE016856) heat shock protein 15 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 135

 Score =  199 bits (506), Expect = 2e-51
 Identities = 93/128 (72%), Positives = 107/128 (83%)

>gb|AAL22359.1| (AE008860) heat shock protein [Salmonella typhimurium LT2]
          Length = 133

 Score =  137 bits (346), Expect = 8e-33
 Identities = 72/130 (55%), Positives = 91/130 (70%), Gaps = 1/130 (0%)








 
Structural Features:
COG1188, COG1188, Ribosome-associated heat shock protein implicated in the 
recycling of the 50S subunit (S4 paralog) 
[Translation, ribosomal structure and biogenesis]
CD-Length = 100 residues,  99.0% aligned
Score =  110 bits (276), Expect = 6e-26
Identities = 59/99 (59%), Positives = 71/99 (71%)







   
Genomic Context:






   
Comment:
other possible gene name: yrfH


















    ReferenceID:15182




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26737




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34879




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4798_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4798
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7175
                           PA5195_tr
                           translation of PA5195
                           131
                           98.47
                           99.23
                           0
                           658.0
     

     
     
187950
                           gb|AAG08580.1|AE004932_7
                           (AE004932) probable heat shock protein [Pseudomonas aeruginosa PAO1]
                           131
                           97.70
                           99.23
                           0
                           655.0
     

     
     
187951
                           gb|AAN65882.1|AE016216_3
                           (AE016775) heat shock protein 15 [Pseudomonas putida KT2440]
                           133
                           78.94
                           88.72
                           2
                           554.0
     

     
     
187952
                           gb|AAO53783.1|
                           (AE016856) heat shock protein 15 [Pseudomonas syringae pv. tomato str. DC3000]
                           135
                           69.62
                           81.48
                           4
                           503.0
     

     
     
187956
                           emb|CAD08117.1|
                           (AL627281) heat shock protein [Salmonella enterica subsp. enterica serovar Typhi]
                           133
                           54.13
                           67.66
                           2
                           343.0
     

     






      

          
GC ORFID: 47800How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5195Glimmer Score: 

          
Start: 5384263Stop: 5383868

          
Length: 396


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5195 translation of PA5195Homolog Bit Score 258.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3971 (ORF: BLASTX 197.0), t_PA5195 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGAGAAAGACGACGACAAGGTGCGCCTGGACAAGTGGCTCTGGGCGGCGCGCTTCTTCAAGACCCGG 
GCGCTGGCCAAGGCCGCGATAGAGGGCGGCAAGGTGCATTGCCGGGGCGAGCGGTGCAAGCCGAGCAAGGAA 
CCCAGGGTAGGGGAGGAATTGACCATTCGTACGGGCTTCGACGAGCGAACCGTGACGATTCGCGCGCTTTCC 
GTAGTCCGGCGTGGCGCGCCGGAGGCCCAGGCTCTCTACGAGGAAACCGCGGACAGCGTGGAAAGCCGCGAG 
CGCGCGGCGGCCATGCGCAAGGCCGGGGCGCTGGGCGTACAGACCGAGGGGCGGCCGAGCAAGAAGCAGCGG 
CGGCAGATCCACCAGTTGCGCGGCGGCCAGGACTGA