ViewGene
Locus Name:
GeneID:
Location:

GeneID:4797
TrivialName: PA14_67940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67940
PAO1 Ortholog Locus:PA5144
Sequence Length:399
Protein Length:132
Start: 6064004
Stop: 6064402
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08529.1|AE004927_7 (AE004927) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/132 (98%), Positives = 131/132 (99%)
Sequence:
ATGCCCGTGATCGTCGAAACCCTCGCCCAACCCAGCGCCCAGGATCGCCTGGACCTGGCGAAGATCTACGCC
GACGCACCGGACTGGCTGTTCGCCCCGCATGCCGACGGCGCGGCGCTGGTCGCGGCCGGGCTGGCCGCCGGC
GAGCTGATCGCCGGGCGCTTCAACGACCGCCTGCTGGGTGCCGCCCTGCTGCGGCGCGGCGGCGACGCCTGG
CAGCTGTCGCACCTCTGCGTGCGCGGCATCACCCGCGGCCGCGGGGTCGGCCGACGCCTCCTCGACGAAGCC
CGACGCCTGGCCGCCGAAGCCGGCAAGCCGCTGCGCCTGGTCGCCCCGGACGGGCACCTGGAATCCCGCGCC
CTCGCCGCGCGCCACGGGCTGCCGCTGGACAGCCTCTGA
Translation:
MPVIVETLAQPSAQDRLDLAKIYADAPDWLFAPHADGAALVAAGLAAGELIAGRFNDRLLGAALLRRGGDAW
QLSHLCVRGITRGRGVGRRLLDEARRLAAEAGKPLRLVAPDGHLESRALAARHGLPLDSL*
AnnotationID:4802GeneID:4797
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:03
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5144
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9594




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26735




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34923




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4797_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4797
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7174
                           PA5144_tr
                           translation of PA5144
                           132
                           98.48
                           99.24
                           0
                           659.0
     

     
     
187949
                           gb|AAG08529.1|AE004927_7
                           (AE004927) hypothetical protein PA5144 [Pseudomonas aeruginosa PAO1]
                           132
                           98.48
                           99.24
                           0
                           659.0
     

     






      

          
GC ORFID: 47799How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5144Glimmer Score: 

          
Start: 5327689Stop: 5328087

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5144 translation of PA5144Homolog Bit Score 258.0

          
Other Homologs:  t_PA5144 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGTGATCGTCGAAACCCTCGCCCAACCCAGCGCCCAGGATCGCCTGGACCTGGCGAAGATCTACGCC 
GACGCACCGGACTGGCTGTTCGCCCCGCATGCCGACGGCGCGGCGCTGGTCGCGGCCGGGCTGGCCGCCGGC 
GAGCTGATCGCCGGGCGCTTCAACGACCGCCTGCTGGGTGCCGCCCTGCTGCGGCGCGGCGGCGACGCCTGG 
CAGCTGTCGCACCTCTGCGTGCGCGGCATCACCCGCGGCCGCGGGGTCGGCCGACGCCTCCTCGACGAAGCC 
CGACGCCTGGCCGCCGAAGCCGGCAAGCCGCTGCGCCTGGTCGCCCCGGACGGGCACCTGGAATCCCGCGCC 
CTCGCCGCGCGCCACGGGCTGCCGCTGGACAGCCTCTGA