ViewGene
Locus Name:
GeneID:
Location:

GeneID:4795
TrivialName: PA14_59890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59890
PAO1 Ortholog Locus:
Sequence Length:387
Protein Length:128
Start: 5333221
Stop: 5333607
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84154.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 128/128 (100%), Positives = 128/128 (100%)
Sequence:
ATGCCCGAAGAACATCTGTTTCAGGATGGAACCCTCAGCTTCCTGCCGACCCGTTTGAACCGGCAACCGGTA
GTCATCGGCGGCCTGACCGCAGACGAAATGTGGATCACGGTCTTCACCAGCGGAGCAGCCGGGTTCGTTCTT
GGCATCCCGGCTGCCTTGGTCGCAGGTAACGCTGCCTGCATTCCACTGGGCGCGCTGCTGGTCGGCGCCCTC
GGCCTAGGTATCGGCAGCCGCGTCCTGCGGCGGATGAAGCGGGGGCGGCCCGATACCTGGTTCTACCGCCAG
GTGGAGATGGCCCTCTCGCTGCGCTTTCCCGTCTTCGGCAACCGTCGCCTGGTTACGCGCTCCGGCGCCTGG
ACCAGTCGACGCACGGAGTCCCCATGA
Translation:
MPEEHLFQDGTLSFLPTRLNRQPVVIGGLTADEMWITVFTSGAAGFVLGIPAALVAGNAACIPLGALLVGAL
GLGIGSRVLRRMKRGRPDTWFYRQVEMALSLRFPVFGNRRLVTRSGAWTSRRTESP*
AnnotationID:4800GeneID:4795
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 00:12:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9590




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26731




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4795
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
187942
                           gb|AAP84154.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           128
                           99.99
                           99.99
                           0
                           661.0
     

     
     
187943
                           gb|AAM37124.1|
                           (AE011864) hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           137
                           47.44
                           62.04
                           9
                           317.0
     

     
     
187945
                           gb|AAN62146.1|AF440523_53
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           133
                           45.86
                           63.90
                           6
                           304.0
     

     
     
187944
                           emb|CAE92916.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           136
                           45.58
                           63.23
                           8
                           311.0
     

     
     
187946
                           gb|AAO54401.1|
                           (AE016858) hypothetical protein PSPTO0866 [Pseudomonas syringae pv. tomato str. DC3000]
                           136
                           45.58
                           58.82
                           23
                           287.0
     

     






      

          
GC ORFID: 47797How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL027Glimmer Score: 

          
Start: 4596900Stop: 4597286

          
Length: 387


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL027 128 Homolog: XAC2271 / Hypothetical protein / X. axonopodis pv. citri / 306 (AAM37124) translation of RL027Homolog Bit Score 259.0

          
Other Homologs:  t_RL027 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGAAGAACATCTGTTTCAGGATGGAACCCTCAGCTTCCTGCCGACCCGTTTGAACCGGCAACCGGTA 
GTCATCGGCGGCCTGACCGCAGACGAAATGTGGATCACGGTCTTCACCAGCGGAGCAGCCGGGTTCGTTCTT 
GGCATCCCGGCTGCCTTGGTCGCAGGTAACGCTGCCTGCATTCCACTGGGCGCGCTGCTGGTCGGCGCCCTC 
GGCCTAGGTATCGGCAGCCGCGTCCTGCGGCGGATGAAGCGGGGGCGGCCCGATACCTGGTTCTACCGCCAG 
GTGGAGATGGCCCTCTCGCTGCGCTTTCCCGTCTTCGGCAACCGTCGCCTGGTTACGCGCTCCGGCGCCTGG 
ACCAGTCGACGCACGGAGTCCCCATGA