ViewGene
Locus Name:
GeneID:
Location:

GeneID:4794
TrivialName: PA14_07040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07040
PAO1 Ortholog Locus:PA0542
Sequence Length:420
Protein Length:139
Start: 610151
Stop: 609732
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03931.1|AE004490_11 (AE004490) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 136/139 (97%), Positives = 137/139 (98%)
Sequence:
ATGTCCATTCGTCCTTCACTGCCGCTGGCCGGGCTGCTGCTCGCCGTCTCCCTGCCGCTCTCCGCCGCCCAG
CCGGGCACCACCAAAGGCGCCCCGCTCAGCGGTTGCGCCGCCAAGCAGGCCGCCATCGAGGCGAAGCTGGAA
ACGGCCCGCTCGTTCGCCAACGAAGGCCAGGTGGCCGGCTTGGAAAAGGCCCTCTCCGAGGTCAAGGAACAC
TGCACCGAAGCCGGCCTGCTGAGGGAGAACAAGCAGAAGGTGATCGACAGCGAGCGCGAGGTCAGCGAACGC
GAGAAGGATTTGCGCAAGGCCATGGGCAAGGGCGATCCGGAGAAGATCGAGAAACGCAAGGCCAAGCTGGCC
GAGGCCCGCGCCGAACTGGAAGAGGCCAAGAAAGGCCTGGAACAGGCCCAGGCACAGTAG
Translation:
MSIRPSLPLAGLLLAVSLPLSAAQPGTTKGAPLSGCAAKQAAIEAKLETARSFANEGQVAGLEKALSEVKEH
CTEAGLLRENKQKVIDSEREVSEREKDLRKAMGKGDPEKIEKRKAKLAEARAELEEAKKGLEQAQAQ*
AnnotationID:4799GeneID:4794
AnnotatorUID: diggins
Modification Date/Time: 2004-08-16 17:05:35
Gene Name:
Confidence Code:3
GeneProduct:putative exported protein
Cell Localization:()
Synonyms:yqjC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL22101.1| (AE008848) putative periplasmic protein [Salmonella typhimurium
           LT2]
          Length = 122

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 39/93 (41%), Positives = 66/93 (70%)

>gb|AAO70689.1| (AE016844) putative exported protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 122

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 39/93 (41%), Positives = 66/93 (70%)

>emb|CAD07752.1| (AL627278) putative exported protein [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 122

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 39/93 (41%), Positives = 66/93 (70%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9588




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26729




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33841




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4794_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4794
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7172
                           PA0542_tr
                           translation of PA0542
                           139
                           97.84
                           98.56
                           0
                           663.0
     

     
     
187939
                           gb|AAG03931.1|AE004490_11
                           (AE004490) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           139
                           97.84
                           98.56
                           0
                           663.0
     

     
     
187940
                           gb|AAO53925.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           142
                           47.18
                           64.78
                           9
                           289.0
     

     
     
187941
                           gb|AAN70536.1|AE016696_1
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           144
                           46.52
                           63.19
                           19
                           286.0
     

     






      

          
GC ORFID: 47796How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0542Glimmer Score: 

          
Start: 6411493Stop: 6411074

          
Length: 420


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0542 translation of PA0542Homolog Bit Score 259.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6874 (ORF: BLASTX 112.0), t_PA0542 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATTCGTCCTTCACTGCCGCTGGCCGGGCTGCTGCTCGCCGTCTCCCTGCCGCTCTCCGCCGCCCAG 
CCGGGCACCACCAAAGGCGCCCCGCTCAGCGGTTGCGCCGCCAAGCAGGCCGCCATCGAGGCGAAGCTGGAA 
ACGGCCCGCTCGTTCGCCAACGAAGGCCAGGTGGCCGGCTTGGAAAAGGCCCTCTCCGAGGTCAAGGAACAC 
TGCACCGAAGCCGGCCTGCTGAGGGAGAACAAGCAGAAGGTGATCGACAGCGAGCGCGAGGTCAGCGAACGC 
GAGAAGGATTTGCGCAAGGCCATGGGCAAGGGCGATCCGGAGAAGATCGAGAAACGCAAGGCCAAGCTGGCC 
GAGGCCCGCGCCGAACTGGAAGAGGCCAAGAAAGGCCTGGAACAGGCCCAGGCACAGTAG