ViewGene
Locus Name:
GeneID:
Location:

GeneID:4793
TrivialName: PA14_70650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70650
PAO1 Ortholog Locus:PA5352
Sequence Length:402
Protein Length:133
Start: 6292802
Stop: 6292401
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08737.1|AE004947_7 (AE004947) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/133 (100%), Positives = 133/133 (100%)
Sequence:
ATGCACAGCAAGCCGGTACTCGGCCGCGAGGAGGTCGCCCGCGTCCTTGGCGCGGCCCGCGAGGAGGCACAG
CGCCAAGGCTGGGCGGTGAGCATCGCGGTGGTCGACGACGGCGGCCACCCGCTGGCGCTGGAGCGCCTCGAC
GGCTGCGCGCCGATCGGTGCCTACATCGCGACGGAAAAGGCCCGCAGCGCCGCCCTCGGGCGCCGGGAAACG
AAGCGCTACGAGGACATGATCAACGGCGGACGCAGTGCCTTCCTCTCGGTGCCGCTGCTGCAGGCCACCCTG
GAGGGCGGCGTGCCGATCCTGGTGGACGGACAGGTGGTCGGCGCGGTCGGGGTTTCCGGCGTACGCGCCGAA
GAGGACGCCCGGGTGGCGCGGATCGGAGCCGAGGGGCTGTGA
Translation:
MHSKPVLGREEVARVLGAAREEAQRQGWAVSIAVVDDGGHPLALERLDGCAPIGAYIATEKARSAALGRRET
KRYEDMINGGRSAFLSVPLLQATLEGGVPILVDGQVVGAVGVSGVRAEEDARVARIGAEGL*
AnnotationID:4798GeneID:4793
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 06:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative GlcG protein
Cell Localization:()
Synonyms:glcG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3193
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69343.1|AE016571_9 (AE016788) glcG protein [Pseudomonas putida KT2440]
          Length = 132

 Score =  185 bits (470), Expect = 3e-47
 Identities = 92/133 (69%), Positives = 116/133 (87%), Gaps = 1/133 (0%)

>gb|AAO57032.1| (AE016868) glcG protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 135

 Score =  174 bits (442), Expect = 6e-44
 Identities = 87/133 (65%), Positives = 111/133 (83%), Gaps = 1/133 (0%)

>emb|CAD15669.1| (AL646067) PROBABLE GLCG PROTEIN [Ralstonia solanacearum]
          Length = 137

 Score =  171 bits (433), Expect = 7e-43
 Identities = 84/129 (65%), Positives = 104/129 (80%)






 
Structural Features:
COG3193, GlcG, Uncharacterized protein, possibly involved in utilization of glycolate 
and propanediol 
CD-Length = 141 residues,  96.5% aligned
Score =  133 bits (335), Expect = 9e-33
Identities = 62/136 (45%), Positives = 80/136 (58%), Gaps = 3/136 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9586




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26727




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34744




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4793_cdd.html


    		




 
URL:

















    ReferenceID:35685




  
Author/Investigator(s):
        Pellicer MT, Badia J, Aguilar J, Baldoma L.





  
Title:
        glc locus of Escherichia coli: characterization of genes encoding the subunits of glycolate oxidase and the glc regulator protein.




  
PubMed:
        8606183


MedLine:
        




    
Source:
J Bacteriol. 1996 Apr;178(7):2051-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8606183









           
Homologs By Global Alignment 

           

       



     
Gene ID:4793
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7171
                           PA5352_tr
                           translation of PA5352
                           133
                           99.99
                           99.99
                           0
                           662.0
     

     
     
187926
                           gb|AAG08737.1|AE004947_7
                           (AE004947) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           133
                           99.99
                           99.99
                           0
                           662.0
     

     
     
187927
                           gb|AAN69343.1|AE016571_9
                           (AE016788) glcG protein [Pseudomonas putida KT2440]
                           133
                           69.17
                           87.21
                           1
                           472.0
     

     
     
187928
                           gb|AAO57032.1|
                           (AE016868) glcG protein [Pseudomonas syringae pv. tomato str. DC3000]
                           136
                           63.97
                           81.61
                           4
                           444.0
     

     
     
187929
                           emb|CAD15669.1|
                           (AL646067) PROBABLE GLCG PROTEIN [Ralstonia solanacearum]
                           137
                           61.31
                           76.64
                           4
                           432.0
     

     






      

          
GC ORFID: 47795How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5352Glimmer Score: 

          
Start: 5556491Stop: 5556090

          
Length: 402


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5352 translation of PA5352Homolog Bit Score 259.0

          
Other Homologs:  t_PA5352 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAGCAAGCCGGTACTCGGCCGCGAGGAGGTCGCCCGCGTCCTTGGCGCGGCCCGCGAGGAGGCACAG 
CGCCAAGGCTGGGCGGTGAGCATCGCGGTGGTCGACGACGGCGGCCACCCGCTGGCGCTGGAGCGCCTCGAC 
GGCTGCGCGCCGATCGGTGCCTACATCGCGACGGAAAAGGCCCGCAGCGCCGCCCTCGGGCGCCGGGAAACG 
AAGCGCTACGAGGACATGATCAACGGCGGACGCAGTGCCTTCCTCTCGGTGCCGCTGCTGCAGGCCACCCTG 
GAGGGCGGCGTGCCGATCCTGGTGGACGGACAGGTGGTCGGCGCGGTCGGGGTTTCCGGCGTACGCGCCGAA 
GAGGACGCCCGGGTGGCGCGGATCGGAGCCGAGGGGCTGTGA