ViewGene
Locus Name:
GeneID:
Location:

GeneID:4792
TrivialName: PA14_58220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58220
PAO1 Ortholog Locus:PA4486
Sequence Length:387
Protein Length:128
Start: 5181040
Stop: 5181426
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07874.1|AE004862_8 (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 127/128 (99%), Positives = 128/128 (100%)
Sequence:
ATGAGCGAACAAGGCAAGACCGGCCTGGATATCCGACGTGAAGTCATGGGCGACGCCTTCGTCGAGCGCGCC
ATGGGCAACGCCACCGCCTTCACCCAGCCATTGCAGGACTTCGTCAACGAGCATGCCTGGGGCTCGGTCTGG
GCCCGCGAGGCGCTGCCGCGCAAGACCCGCAGCTTGATCACCCTGGCCGCCCTGACCGCCCTGAAATGCCCG
CAGGAACTCAAGGGGCACGTGCGCGGCGCGCTGAACAACGGCTGCACGGTGGAGGAAATCCGCGAGGCACTG
CTGCACTGCGCGGTCTATGCCGGGGTGCCGGCGGCGATCGATGCGTTCCGTGCGGCCCAGGAAGCGATCGAT
ACCTGGCAGGGTGAACAGCCCGCCTGA
Translation:
MSEQGKTGLDIRREVMGDAFVERAMGNATAFTQPLQDFVNEHAWGSVWAREALPRKTRSLITLAALTALKCP
QELKGHVRGALNNGCTVEEIREALLHCAVYAGVPAAIDAFRAAQEAIDTWQGEQPA*
AnnotationID:4797GeneID:4792
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 14:02:02
Gene Name:
Confidence Code:3
GeneProduct:putative carboxymuconolactone decarboxylase
Cell Localization:()
Synonyms:PA4486
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0599,pfam02627
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57927.1| (AE016872) 4-carboxymuconolactone decarboxylase [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 127

 Score =  208 bits (530), Expect = 4e-54
 Identities = 100/115 (86%), Positives = 108/115 (93%)

>gb|AAN69248.1|AE016559_7 (AE016787) carboxymuconolactone decarboxylase family protein
           [Pseudomonas putida KT2440]
          Length = 129

 Score =  129 bits (324), Expect = 3e-30
 Identities = 62/117 (52%), Positives = 84/117 (71%)

>emb|CAE38920.1| (BX640434) 4-carboxymuconolactone decarboxylase [Bordetella
           parapertussis]
          Length = 136

 Score =  128 bits (322), Expect = 5e-30
 Identities = 61/124 (49%), Positives = 85/124 (68%)







 
Structural Features:
COG0599, Uncharacterized homolog of gamma-carboxymuconolactone 
decarboxylase subunit 
CD-Length = 124 residues, 100.0% aligned
Score =  105 bits (264), Expect = 3e-24
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 3/124 (2%)

pfam02627, CMD, Carboxymuconolactone decarboxylase family.
CD-Length = 92 residues,  88.0% aligned
Score = 85.8 bits (212), Expect = 3e-18
Identities = 45/83 (54%), Positives = 50/83 (60%), Gaps = 2/83 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9584




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26725




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31529




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4792_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4792
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7169
                           PA4486_tr
                           translation of PA4486
                           128
                           99.21
                           99.99
                           0
                           662.0
     

     
     
187881
                           gb|AAG07874.1|AE004862_8
                           (AE004862) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           128
                           99.21
                           99.99
                           0
                           662.0
     

     
     
187882
                           gb|AAO57927.1|
                           (AE016872) 4-carboxymuconolactone decarboxylase [Pseudomonas syringae pv. tomato str. DC3000]
                           129
                           78.29
                           86.82
                           3
                           522.0
     

     
     
187885
                           gb|AAN69248.1|AE016559_7
                           (AE016787) carboxymuconolactone decarboxylase family protein [Pseudomonas putida KT2440]
                           129
                           48.83
                           65.89
                           1
                           319.0
     

     
     
187889
                           gb|AAM39690.1|
                           (AE012133) 4-Carboxymuconolactone decarboxylase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           134
                           47.76
                           60.44
                           6
                           318.0
     

     






      

          
GC ORFID: 47794How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4486Glimmer Score: 

          
Start: 4444719Stop: 4445105

          
Length: 387


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4486 translation of PA4486Homolog Bit Score 259.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5568 (ORF: BLASTX 207.0), t_PA0232 (ORF: BLASTX 112.0), psyr_15may02_Scaffold1_revised_gene1098 (ORF: BLASTX 111.0), t_PA4486 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAACAAGGCAAGACCGGCCTGGATATCCGACGTGAAGTCATGGGCGACGCCTTCGTCGAGCGCGCC 
ATGGGCAACGCCACCGCCTTCACCCAGCCATTGCAGGACTTCGTCAACGAGCATGCCTGGGGCTCGGTCTGG 
GCCCGCGAGGCGCTGCCGCGCAAGACCCGCAGCTTGATCACCCTGGCCGCCCTGACCGCCCTGAAATGCCCG 
CAGGAACTCAAGGGGCACGTGCGCGGCGCGCTGAACAACGGCTGCACGGTGGAGGAAATCCGCGAGGCACTG 
CTGCACTGCGCGGTCTATGCCGGGGTGCCGGCGGCGATCGATGCGTTCCGTGCGGCCCAGGAAGCGATCGAT 
ACCTGGCAGGGTGAACAGCCCGCCTGA