ViewGene
Locus Name:
GeneID:
Location:

GeneID:4791
TrivialName: PA14_29600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29600
PAO1 Ortholog Locus:PA2666
Sequence Length:357
Protein Length:118
Start: 2566324
Stop: 2565968
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06054.1|AE004695_7 (AE004695) probable 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas aeruginosa PAO1]
Identities = 118/118 (100%), Positives = 118/118 (100%)
Sequence:
GTGGAACTCTTCAAAGAATTCACCTTCGAATCCGCCCATCGCCTGCCCCACGTCCCCGAAGGCCACAAATGC
GGGCGCCTGCACGGCCACTCGTTCCGTGTCGCCATCCACATCGAAGGCGAGGTCGATCCGCATACCGGCTGG
ATCCGCGACTTCGCGGAAATCAAGGCGATCTTCAAGCCGATCTACGAGCAACTCGACCACAATTATCTGAAC
GATATTCCAGGCTTGGAAAACCCCACCAGCGAAAACCTCTGCCGCTGGATCTGGCAACAACTCAAGCCGCTG
TTGCCGGAACTCTCCAAGGTCCGCGTCCACGAAACTTGCACCAGCGGTTGCGAATATCGGGGCGATTGA
Translation:
MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKPIYEQLDHNYLN
DIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRGD*
AnnotationID:4796GeneID:4791
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:53
Gene Name:
Confidence Code:3
GeneProduct:putative 6-pyruvoyl-tetrahydropterin synthase
Cell Localization:()
Synonyms:ptpS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01242,cd00470,COG0720
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56908.1| (AE016868) 6-pyruvoyl tetrahydrobiopterin synthase, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 118

 Score =  233 bits (595), Expect = 1e-61
 Identities = 101/118 (85%), Positives = 111/118 (94%)

>gb|AAN67954.1|AE016428_2 (AE016782) 6-pyruvoyl tetrahydrobiopterin synthase, putative
           [Pseudomonas putida KT2440]
          Length = 118

 Score =  232 bits (591), Expect = 3e-61
 Identities = 99/118 (83%), Positives = 111/118 (94%)

>gb|AAP18095.1| (AE016987) putative 6-pyruvoyl tetrahydrobiopterin synthase
           [Shigella flexneri 2a str. 2457T]
          Length = 120

 Score =  201 bits (512), Expect = 5e-52
 Identities = 89/116 (76%), Positives = 101/116 (87%)








 
Structural Features:
pfam01242, PTPS, 6-pyruvoyl tetrahydropterin synthase.
CD-Length = 131 residues,  97.7% aligned
Score =  149 bits (378), Expect = 6e-38
Identities = 56/127 (44%), Positives = 72/127 (56%), Gaps = 12/127 (9%)

cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS).
CD-Length = 135 residues,  97.8% aligned
Score =  143 bits (361), Expect = 5e-36
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 16/132 (12%)

COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
CD-Length = 127 residues,  98.4% aligned
Score =  130 bits (327), Expect = 5e-32
Identities = 56/127 (44%), Positives = 77/127 (60%), Gaps = 11/127 (8%)







   
Genomic Context:






   
Comment:
other possible gene name: ygcM


















    ReferenceID:15178




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26723




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36351




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4791_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4791
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7168
                           PA2666_tr
                           translation of PA2666
                           118
                           99.99
                           99.99
                           0
                           662.0
     

     
     
187849
                           gb|AAG06054.1|AE004695_7
                           (AE004695) probable 6-pyruvoyl tetrahydrobiopterin synthase [Pseudomonas aeruginosa PAO1]
                           118
                           99.15
                           99.99
                           0
                           659.0
     

     
     
187850
                           gb|AAO56908.1|
                           (AE016868) 6-pyruvoyl tetrahydrobiopterin synthase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           118
                           84.74
                           94.06
                           0
                           591.0
     

     
     
187851
                           gb|AAN67954.1|AE016428_2
                           (AE016782) 6-pyruvoyl tetrahydrobiopterin synthase, putative [Pseudomonas putida KT2440]
                           118
                           83.05
                           94.06
                           0
                           587.0
     

     
     
187853
                           gb|AAP18095.1|
                           (AE016987) putative 6-pyruvoyl tetrahydrobiopterin synthase [Shigella flexneri 2a str. 2457T]
                           120
                           74.16
                           84.16
                           2
                           511.0
     

     






      

          
GC ORFID: 47793How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2666Glimmer Score: 

          
Start: 2387602Stop: 2387958

          
Length: 357


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2666 translation of PA2666Homolog Bit Score 259.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2780 (ORF: BLASTX 238.0), psyr_15may02_Scaffold1_revised_gene169 (ORF: BLASTX 183.0), t_PA2666 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAACTCTTCAAAGAATTCACCTTCGAATCCGCCCATCGCCTGCCCCACGTCCCCGAAGGCCACAAATGC 
GGGCGCCTGCACGGCCACTCGTTCCGTGTCGCCATCCACATCGAAGGCGAGGTCGATCCGCATACCGGCTGG 
ATCCGCGACTTCGCGGAAATCAAGGCGATCTTCAAGCCGATCTACGAGCAACTCGACCACAATTATCTGAAC 
GATATTCCAGGCTTGGAAAACCCCACCAGCGAAAACCTCTGCCGCTGGATCTGGCAACAACTCAAGCCGCTG 
TTGCCGGAACTCTCCAAGGTCCGCGTCCACGAAACTTGCACCAGCGGTTGCGAATATCGGGGCGATTGA