ViewGene
Locus Name:
GeneID:
Location:

GeneID:4790
TrivialName: PA14_41030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41030
PAO1 Ortholog Locus:PA1817
Sequence Length:390
Protein Length:129
Start: 3660051
Stop: 3660440
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05206.1|AE004608_5 (AE004608) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 127/129 (98%), Positives = 129/129 (100%)
Sequence:
ATGCGCAGCGCTTATCGGATCGTCAGCGATCACTATGCGGCCTCCAGCCGTGGGGACCTCGCCGGAATGCTG
GCGGACATGGACGAACGCACCGAATGGACGGAAATGGCCGGTTTCCCGCTGGCCGGCACCTATGTCGGCGCG
GCCGCCATCGGCGCCGGTGTGTTCCAGGCCTTGCAGCGGGACTGGGAGGGCTTCAGGGTCGAGATCGAGCGC
CTGATCGACGGCGGCGACAGCGTGGTCGCCGTCGGTCGATATGCAGCGACCCACCGTCGCAGCGGCAAGTCG
TTCGAAGCGCGCGTGGCACACGTATGGACGGTGGAGGACGGCAGGATCCGCCGTTTCGAGCAGTTCTGCGAC
ACCTTGCTGGTGGAGCGGGCGACGCGCTGA
Translation:
MRSAYRIVSDHYAASSRGDLAGMLADMDERTEWTEMAGFPLAGTYVGAAAIGAGVFQALQRDWEGFRVEIER
LIDGGDSVVAVGRYAATHRRSGKSFEARVAHVWTVEDGRIRRFEQFCDTLLVERATR*
AnnotationID:4795GeneID:4790
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 19:07:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1817
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3631
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3631, COG3631, Ketosteroid isomerase-related protein
CD-Length = 133 residues,  97.0% aligned
Score =  108 bits (271), Expect = 2e-25
Identities = 50/129 (38%), Positives = 65/129 (50%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9580




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26721




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37077




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4790_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4790
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7167
                           PA1817_tr
                           translation of PA1817
                           129
                           98.44
                           99.99
                           0
                           662.0
     

     
     
187847
                           gb|AAG05206.1|AE004608_5
                           (AE004608) hypothetical protein PA1817 [Pseudomonas aeruginosa PAO1]
                           129
                           98.44
                           99.99
                           0
                           662.0
     

     
     
187848
                           gb|AAQ60529.1|
                           (AE016920) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           132
                           45.45
                           58.33
                           3
                           279.0
     

     






      

          
GC ORFID: 47792How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1817Glimmer Score: 

          
Start: 1293859Stop: 1293470

          
Length: 390


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1817 translation of PA1817Homolog Bit Score 259.0

          
Other Homologs:  t_PA1817 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAGCGCTTATCGGATCGTCAGCGATCACTATGCGGCCTCCAGCCGTGGGGACCTCGCCGGAATGCTG 
GCGGACATGGACGAACGCACCGAATGGACGGAAATGGCCGGTTTCCCGCTGGCCGGCACCTATGTCGGCGCG 
GCCGCCATCGGCGCCGGTGTGTTCCAGGCCTTGCAGCGGGACTGGGAGGGCTTCAGGGTCGAGATCGAGCGC 
CTGATCGACGGCGGCGACAGCGTGGTCGCCGTCGGTCGATATGCAGCGACCCACCGTCGCAGCGGCAAGTCG 
TTCGAAGCGCGCGTGGCACACGTATGGACGGTGGAGGACGGCAGGATCCGCCGTTTCGAGCAGTTCTGCGAC 
ACCTTGCTGGTGGAGCGGGCGACGCGCTGA