ViewGene
Locus Name:
GeneID:
Location:

GeneID:479
TrivialName: PA14_55360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55360
PAO1 Ortholog Locus:PA0693
Sequence Length:1848
Protein Length:615
Start: 4915082
Stop: 4913235
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04082.1|AE004505_3 (AE004505) transport protein ExbB2 [Pseudomonas aeruginosa PAO1]
Identities = 613/615 (99%), Positives = 614/615 (99%)
Sequence:
ATGTATCGCTTATTGCTGACATCGCTGATCTGCCTGGGCCTGCTGGCCCCGGCCAGCGCCAGTGCCTGGTGG
CAGGACGACTGGCAGTACCGCAAGCAGGTCTCGGTCGATACCACCCCGCAAGGCGCGGCGATCAACGAGAGT
CTCGGTCGCCTGCCGTTGCTGGTGCGCCTGCATACCGGCAACTTCACCTTCGACGGGGTCAACGAGAACGGC
TCGGACATCCGCTTCGTCGCCGCCGACGACAAGACCGTGTTGCGCCACCAGGTCGAGAGCTTCGACCCGCTG
ATGGGCATGGCCCTGATCTGGGTCGACGTGCCGCGGGTGGAGGGTGGCCAGCGCCAGGACATCTGGATGTAC
TACGGCAACGCCAAGGCGCCGGAGAGCGGCAACGGCCAGTCGGTGTTCGACCCGGACTACACCCTGGTCTAT
CACTTCGACGGTGCGCCGGGCACTCCGCCGCGGGACTCCACCGCCTACGCCAACAATGCGCAGACCGCCGCC
GGCAGTCCGGTGGAGGGCGTCATCGGTCGCTCCGCGCAACTGCTGGGCCAGCCGCTGCTGCTGCCGGCCAGC
CCATCGCTGGCGGTGAGCGCCGGTGGCACCTTCAGCTTCAGCGGCTGGGTGCGTCCCGACCAACTGGCCGGC
GAACAGGTCCTGCTGTCGCGCCGCGAAGGCGGCAACGCCCTGTTGGTCGGCCTGGCCCAGGGCGCGCCCTTC
GTCGAGCTGAACGGTCAGCGCGCTGCCGCCAGCCAGGCCCTGGCGCAGGGGCAATGGCAGCATCTGGCGCTG
GTCGCCGACGGTACCCGGCTGGCGCTGTATCTCGGCGGTCGCGAAGTCGCCAGCCTGGCGGCGGCGCTGCCG
GCGTTCAGCGGCGCGATCGCCATCGGCGCGGAAGGCCAGGCCGCGCCTGCGGTCGCCACCGAAGCGGCAAGC
GGGGAAGGTGAGGCGAGCGCCGCGGCGCCGACCCTGCAACCCTTCCAGGGCGCCATCGACGAGTTGCGCCTG
TCGAAGATCGCCCGCCCGGCGGCGCTGCTCCTCGCCGATGCCACCGCCCAGGGCGCCGAGTCGCGCCTGGTG
GCCTACGGGGTCGACGAGAAGCAGTCCGGCTTCGGCTTCGGCAAGCTCGGCTTCCTGCTCAACGCAGTGCCG
CTGGATGCCTGGGTGATCATCGCGATCCTGGCGCTGATGATGGTCCAGTCGTGGGTCATCATGTACCGCAAG
AACCAGAACGTCGGCCGTGTCAGTCGCGCCAACGGGCTGTTCCGCGAGCGCTTCGCCGAGGTCGGCACGCGC
CTGGAACTGCTCGCCGACGACCGCGAGCTGGCCGCCCGCCTGCAACACTCCTCGCTGTGGCGCCTGTACCAG
GTGGCGGTGAAGGAGATCCGCACCCGCCGCGAGCAGGGCGCCGACACCTCTTCCGTCTCCGCGGCCACCATC
GAGGCGATCCGCGCCTCCATGGACGGCGTGCGCACCAAGGAGAACCAGCAGCTCGGCTCGCGCTTGTCGAGC
CTGTCCAACGCCATCGCCGGCGGCCCCTACATCGGCCTGCTCGGCACCGTGCTGGGGATCATGGTGGTGTTC
CTCGGCACCGCCATGGCCGGCGACGTCAACATCAATGCCATCGCCCCGGGCATGGCCGCCGCCCTGCTGGCC
ACGGCCATGGGCCTGTTCGTCGCGATCCCCGCGTTGTTCGGCTACAACCGCCTGGTCACGCGGAACAAGGAA
GTCAGCGCGGACATGCGGGTGTTCGTCGACGAGTTCGTCACCCGCCTCGCCGAGGTGCATGGCGAAAGCCAG
CTCAGCGAAGTGGCCCATCGTCGCAACGGCCAGCCGTTGCCGGCCTGA
Translation:
MYRLLLTSLICLGLLAPASASAWWQDDWQYRKQVSVDTTPQGAAINESLGRLPLLVRLHTGNFTFDGVNENG
SDIRFVAADDKTVLRHQVESFDPLMGMALIWVDVPRVEGGQRQDIWMYYGNAKAPESGNGQSVFDPDYTLVY
HFDGAPGTPPRDSTAYANNAQTAAGSPVEGVIGRSAQLLGQPLLLPASPSLAVSAGGTFSFSGWVRPDQLAG
EQVLLSRREGGNALLVGLAQGAPFVELNGQRAAASQALAQGQWQHLALVADGTRLALYLGGREVASLAAALP
AFSGAIAIGAEGQAAPAVATEAASGEGEASAAAPTLQPFQGAIDELRLSKIARPAALLLADATAQGAESRLV
AYGVDEKQSGFGFGKLGFLLNAVPLDAWVIIAILALMMVQSWVIMYRKNQNVGRVSRANGLFRERFAEVGTR
LELLADDRELAARLQHSSLWRLYQVAVKEIRTRREQGADTSSVSAATIEAIRASMDGVRTKENQQLGSRLSS
LSNAIAGGPYIGLLGTVLGIMVVFLGTAMAGDVNINAIAPGMAAALLATAMGLFVAIPALFGYNRLVTRNKE
VSADMRVFVDEFVTRLAEVHGESQLSEVAHRRNGQPLPA*
AnnotationID:488GeneID:479
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 16:04:19
Gene Name:exbB2
Confidence Code:2
GeneProduct:transport protein ExbB2
Cell Localization:()
Synonyms:PA0693
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:961




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18103




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:479
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
839
                           PA0693_tr
                           translation of PA0693
                           615
                           99.67
                           99.83
                           0
                           3087.0
     

     
     
34495
                           gb|AAG04082.1|AE004505_3
                           (AE004505) transport protein ExbB2 [Pseudomonas aeruginosa PAO1]
                           615
                           99.67
                           99.83
                           0
                           3087.0
     

     
     
34496
                           emb|CAE26793.1|
                           (BX572597) putative transport protein ExbB2 [Rhodopseudomonas palustris CGA009]
                           682
                           39.73
                           58.06
                           74
                           1252.0
     

     






      

          
GC ORFID: 43481How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0693Glimmer Score: 

          
Start: 38825Stop: 40672

          
Length: 1848


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0693 translation of PA0693Homolog Bit Score 1193.0

          
Other Homologs:  t_PA0693 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTATCGCTTATTGCTGACATCGCTGATCTGCCTGGGCCTGCTGGCCCCGGCCAGCGCCAGTGCCTGGTGG 
CAGGACGACTGGCAGTACCGCAAGCAGGTCTCGGTCGATACCACCCCGCAAGGCGCGGCGATCAACGAGAGT 
CTCGGTCGCCTGCCGTTGCTGGTGCGCCTGCATACCGGCAACTTCACCTTCGACGGGGTCAACGAGAACGGC 
TCGGACATCCGCTTCGTCGCCGCCGACGACAAGACCGTGTTGCGCCACCAGGTCGAGAGCTTCGACCCGCTG 
ATGGGCATGGCCCTGATCTGGGTCGACGTGCCGCGGGTGGAGGGTGGCCAGCGCCAGGACATCTGGATGTAC 
TACGGCAACGCCAAGGCGCCGGAGAGCGGCAACGGCCAGTCGGTGTTCGACCCGGACTACACCCTGGTCTAT 
CACTTCGACGGTGCGCCGGGCACTCCGCCGCGGGACTCCACCGCCTACGCCAACAATGCGCAGACCGCCGCC 
GGCAGTCCGGTGGAGGGCGTCATCGGTCGCTCCGCGCAACTGCTGGGCCAGCCGCTGCTGCTGCCGGCCAGC 
CCATCGCTGGCGGTGAGCGCCGGTGGCACCTTCAGCTTCAGCGGCTGGGTGCGTCCCGACCAACTGGCCGGC 
GAACAGGTCCTGCTGTCGCGCCGCGAAGGCGGCAACGCCCTGTTGGTCGGCCTGGCCCAGGGCGCGCCCTTC 
GTCGAGCTGAACGGTCAGCGCGCTGCCGCCAGCCAGGCCCTGGCGCAGGGGCAATGGCAGCATCTGGCGCTG 
GTCGCCGACGGTACCCGGCTGGCGCTGTATCTCGGCGGTCGCGAAGTCGCCAGCCTGGCGGCGGCGCTGCCG 
GCGTTCAGCGGCGCGATCGCCATCGGCGCGGAAGGCCAGGCCGCGCCTGCGGTCGCCACCGAAGCGGCAAGC 
GGGGAAGGTGAGGCGAGCGCCGCGGCGCCGACCCTGCAACCCTTCCAGGGCGCCATCGACGAGTTGCGCCTG 
TCGAAGATCGCCCGCCCGGCGGCGCTGCTCCTCGCCGATGCCACCGCCCAGGGCGCCGAGTCGCGCCTGGTG 
GCCTACGGGGTCGACGAGAAGCAGTCCGGCTTCGGCTTCGGCAAGCTCGGCTTCCTGCTCAACGCAGTGCCG 
CTGGATGCCTGGGTGATCATCGCGATCCTGGCGCTGATGATGGTCCAGTCGTGGGTCATCATGTACCGCAAG 
AACCAGAACGTCGGCCGTGTCAGTCGCGCCAACGGGCTGTTCCGCGAGCGCTTCGCCGAGGTCGGCACGCGC 
CTGGAACTGCTCGCCGACGACCGCGAGCTGGCCGCCCGCCTGCAACACTCCTCGCTGTGGCGCCTGTACCAG 
GTGGCGGTGAAGGAGATCCGCACCCGCCGCGAGCAGGGCGCCGACACCTCTTCCGTCTCCGCGGCCACCATC 
GAGGCGATCCGCGCCTCCATGGACGGCGTGCGCACCAAGGAGAACCAGCAGCTCGGCTCGCGCTTGTCGAGC 
CTGTCCAACGCCATCGCCGGCGGCCCCTACATCGGCCTGCTCGGCACCGTGCTGGGGATCATGGTGGTGTTC 
CTCGGCACCGCCATGGCCGGCGACGTCAACATCAATGCCATCGCCCCGGGCATGGCCGCCGCCCTGCTGGCC 
ACGGCCATGGGCCTGTTCGTCGCGATCCCCGCGTTGTTCGGCTACAACCGCCTGGTCACGCGGAACAAGGAA 
GTCAGCGCGGACATGCGGGTGTTCGTCGACGAGTTCGTCACCCGCCTCGCCGAGGTGCATGGCGAAAGCCAG 
CTCAGCGAAGTGGCCCATCGTCGCAACGGCCAGCCGTTGCCGGCCTGA